PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G217600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 372aa    MW: 41024.4 Da    PI: 4.0115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G217600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.78.3e-18101372128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                          +Gf+F+P+dee+v  +L ++++g++l+le ++ ++d  ++ Pw L     a++++ +fF + d ++++ k+++  +  g+W ++  +ke 
  Brast04G217600.1.p  10 SAGFKFEPEDEEIVELFLLPRLHGDQLPLEGIFIDADPRSAPPWGLF----ARNSSGFFFGPGDPANQR-KKPRTCVGGGTWVSQKLEKEG 95 
                         68***************************99999************6....345678999999998653.45555889****988776665 PP

                 NAM  93 lsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   ++++v+ k  + f++g+ ++g +t Wvm ey++
  Brast04G217600.1.p  96 ELClglggceEETVVWHKYRFNFHSGSGRTG-STGWVMLEYTI 137
                         54455888877788**********9999997.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-243154IPR003441NAC domain
PROSITE profilePS5100524.8189154IPR003441NAC domain
PfamPF023655.4E-1411137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAATGILRLS AGFKFEPEDE EIVELFLLPR LHGDQLPLEG IFIDADPRSA PPWGLFARNS  60
SGFFFGPGDP ANQRKKPRTC VGGGTWVSQK LEKEGELCLG LGGCEEETVV WHKYRFNFHS  120
GSGRTGSTGW VMLEYTIAEP SDYNSFKVCH ITFSGHGQKR KRVPDSDDQL STSAPCSIAT  180
SYQDHSAGAA RACDQEPFLT QQETDSWADQ QEPAFPMQQL VDQEQPPPLG DDPDSFVGFP  240
GFYSAPQAMG HASTPLPFGQ ESGMPVHMDQ ESGITEQFVP EQFTMPLQMD EETSFPVTFA  300
DYGTAPLPVD QESSMWGQFV EYGTAPLTMD QQFSMPEQSI DFEDPAAVQA ILDSFPDFAN  360
ILDFGEYFSA NT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G217600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649258.13e-50uncharacterized protein LOC107275324
TrEMBLA0A0Q3F8610.0A0A0Q3F861_BRADI; Uncharacterized protein
STRINGBRADI3G10540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-07NAC domain containing protein 57