PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G176700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 303aa MW: 31640.6 Da PI: 9.3017

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G176700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6e-13	82	132	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r++ h + Er RR+r+ + f++L llP++ p K +K++i+ +A++YIk L+ Brast04G176700.1.p 82 RKALHIATERERRRRMSELFSKLHGLLPSL---P-DKTDKSTIVMEAIQYIKTLE 132 6788***********************7...3.9**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.30E-4	79	136	No hit	No description
SuperFamily	SSF47459	3.66E-16	80	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.066	81	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-10	82	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-15	82	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-7	87	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAQENTNTDG KKNKALAAAN SSKFLGSGSG SGSKGSDLTG AGTVDKGKGI VKAQEQEEGG 60 GSKGKMMSIV QGASATAGDS CRKALHIATE RERRRRMSEL FSKLHGLLPS LPDKTDKSTI 120 VMEAIQYIKT LEGTLSELEK RKQDLARGTS WIGTSVNSGI SSSWSSSAAH ASMMAQQPPV 180 GGIFPAGAST VAPVGAAVPA VPVELQTWSG RNVVLSLSGD DAYISVYSAR SAGMLTMVAA 240 ILEKYGIEVV TSEITSDSSR NRFTFHTHRV NAANSLFGDN VSSEDIYKMV VSEITSLLSG 300 EK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G176700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572599.1	1e-157	transcription factor bHLH95
Refseq	XP_010235515.1	1e-157	transcription factor bHLH95
Refseq	XP_010235516.1	1e-157	transcription factor bHLH95
Refseq	XP_010235517.1	1e-157	transcription factor bHLH95
TrEMBL	A0A0Q3M5L3	1e-155	A0A0Q3M5L3_BRADI; Uncharacterized protein
STRING	BRADI3G45360.1	1e-136	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast04G176700.1.p