PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G175100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 716aa    MW: 80906 Da    PI: 6.2692
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G175100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.76.9e-2294180290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek +  +++ + ++trt+C+a+++ + +++g+w+v++l+++HnH+la
  Brast04G175100.1.p  94 LYCDYGHRTGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGEKLT--DANFNDPHTRTNCRAMVRFRVNDHGEWKVIRLVSDHNHNLA 180
                         7****************************************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-1994180IPR004330FAR1 DNA binding domain
PfamPF105518.2E-28303397IPR018289MULE transposase domain
PROSITE profilePS509669.619586622IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-4588619IPR007527Zinc finger, SWIM-type
SMARTSM005750.001597624IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MVNTEGEGGD GGGGDLMCID ENTGVDQCEG AEPQDDAIGG DGTREGISNG NELGRRGYGD  60
EAENEEAATV QGSKEGTEEL LRKVVYSEEE AYKLYCDYGH RTGFSIRKGK QSYFTGTKRI  120
RTKDYFCSKE GLKEGEKLTD ANFNDPHTRT NCRAMVRFRV NDHGEWKVIR LVSDHNHNLA  180
SPEERHLLRS ARSVIAGRSS SVDAVLYGGY QVVGAPSQMA VSTSVTNNPE SSKQDFPHSY  240
NGIPKSPAVG TGDLQSLVNH LKNRANEDGM FYWDVQIDQG GRMTNFFWRD GRSRIDYDCF  300
GDVVVFDSTY SLNRQNLICA PFVGVNHHWQ TAIYGCALLA DESMSSFVWL FKSFLEAMGN  360
RHPRSIFTNQ DQVMSKAIEE VFPSTCHRIA HWHIQKNAAS RLGALNGSKA FNKLFKKCMQ  420
GCDSEAEFEE TWAEMLREFK LQDNKWLNKL YKLKQKWSGA FNKCTFDGGV ENEPQCDSLS  480
NIFSCIADKL TSLSAIVVAV DKLTEDWREK EFDEDTRCCQ KPPACIIKHS DILNHAAKLY  540
THRIYKLFET YFLDGCGATK FKELPCEDGN TYRFEMTMQG RVSRVCTVHL NLSTMQLSCS  600
CGKFETMGLL CPHALKALSI KNVCKIPETY ILKRWTKDAK QWVFNPKLYE SSYQECMGNE  660
AAYCSHVMRY AYDLVMKSQG QEELRKSLWE TLESGEKELE KYLENVAQYA LSYAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G175100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182740.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X1
RefseqXP_020182741.10.0protein FAR1-RELATED SEQUENCE 9-like isoform X1
TrEMBLA0A0Q3FKQ60.0A0A0Q3FKQ6_BRADI; Uncharacterized protein
STRINGBRADI3G45470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-89FAR1-related sequence 5