PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G145900.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 306aa MW: 31618.8 Da PI: 7.3971

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G145900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.4e-12	241	286	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k s +++L +Ave+Ik Lq Brast04G145900.2.p 241 SIAERERRTRISEKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIKGLQ 286 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.399	235	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-15	238	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.43E-12	239	290	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-14	240	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	241	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	241	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MRRFLPGGGG EPSSSSSSGP PHGDQHAAGN DGGLRYGGGD ISLGRGHDQQ QLHFRGGGGG 60 EPEMKGADDG ADLLARHSSS PAGFFSNLMV DDGGFAGSRA GAAGAEGHRS SMKMKSQLGF 120 TAASHLSRIS EGAALFPGAA AAAAGHSHSG GSGGEHGAVS RSFSAGGGGG FSIVGPWDES 180 RDIIGTLDLG GYESQFGGMA SSSSLELAGM DKYMQAQQQQ QQDQVAFKVR AKRGCATHPR 240 SIAERERRTR ISEKLRKLQD LVPNMDKQTS TSDMLDLAVE HIKGLQSQLQ AMKNEQDKCT 300 CCSKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G145900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249954	1e-152	AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165844.1	1e-124	transcription factor bHLH128-like
Swissprot	Q8H102	3e-55	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A446VFW2	1e-131	A0A446VFW2_TRITD; Uncharacterized protein
STRING	Traes_6DL_62A15AED6.2	1e-123	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-40	bHLH family protein

Link Out ? help Back to Top
Phytozome	Brast04G145900.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]