PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G143200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 855aa    MW: 97702.8 Da    PI: 6.894
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G143200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.12.9e-1395177290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +Y++YA + GFs  + ks++  ++g + +  + Cs+ g+ + +         +r++ +++C a++ +k+++d   ++++ +l+HnH+l+
  Brast04G143200.1.p  95 YYKQYAVDSGFSAIILKSSYL-KSGVCRRLVLGCSRAGRGRVNACY-----LSRETAKINCPARISLKLRQDRWLHIDDAKLDHNHPLN 177
                         9*************9999998.7888***************99998.....89999**************99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-1194177IPR004330FAR1 DNA binding domain
PfamPF105513.5E-25281374IPR018289MULE transposase domain
PROSITE profilePS509669.075568604IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-5579606IPR006564Zinc finger, PMZ-type
PfamPF044345.6E-6580600IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MVEELPTEVP IEDVSASVAV KSSELSGNGS LPKNVEKSQE LGGNPVRELP LHEGKEVILL  60
DDNDSGEEDE GRAKVDENAP RFGLRFKTYD DALRYYKQYA VDSGFSAIIL KSSYLKSGVC  120
RRLVLGCSRA GRGRVNACYL SRETAKINCP ARISLKLRQD RWLHIDDAKL DHNHPLNQSS  180
DSLMNCYKKL TDAKNGETTS RLKGRRNVPI VDREQGNFTE IGRLKFGEGD DEYIQKFFGG  240
MQNKNPNFFY LVDLDKQGRL RNLFWSDARS QAAHECFGQD VVYFDTSYLT QKFDLPLVFF  300
TGMNNHGQSV LFGTGLLSDL SSDSYTWLFR AFLTCMKDSY PYTIITEHYN AILDAVREVF  360
PQVKHRLCLY RIMKDVAENL KTHAEFKTIK KALKKVTYGC FKIPEFEAEW KKIIEEHRLA  420
ENECLSSLFM HRQLWAPAYL KDKFWAGMSV SQRGESVTSY YDGFVYPKTS LKQFFSKYEM  480
ILENKYKKEL QADEESSHRT PLTVTKFYME EQLAKAYTIN MFRKFQDELK ATMYCDGMET  540
TVDGSFVTFN VKECSYMEDG KETESRTYEV VCCKEELIVD CECGFFQFTG ILCRHALSVL  600
KLQEVFEIPQ QYVLGRWKRD YKKLHALAHY PNEMLLGGAV ERHDYMFTQC RQLLNLGFIS  660
ESRYLVALKL LREAEKALLE DDQSARERQS ALLSFEAEAP ENGQGLFSPQ FPEGVKNSQS  720
INAKRRGRPA KKVTESNPDT VLRSNKEQDF LRSSFVTAET SMIQGTPPAS HLESSHMGVQ  780
GSIDLMDGIS PNLSFGGHFG MDVNHQHQVP SQARMLPNNF MQVQADPHGF GNQWVYNPTM  840
QDNPLLRTPT RRAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G143200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572701.20.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLI1IBE90.0I1IBE9_BRADI; Uncharacterized protein
STRINGBRADI3G48310.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-111FAR1-related sequence 6