PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G138300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 665aa    MW: 70879.1 Da    PI: 6.3633
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G138300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-10288344155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Brast04G138300.1.p 288 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 344
                         57*******************5444.2455535555.7799999*************98 PP
2AP249.88.4e-16387438155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Brast04G138300.1.p 387 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 438
                         89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-16288354No hitNo description
SuperFamilySSF541714.12E-14288354IPR016177DNA-binding domain
PfamPF008473.5E-8288344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-11289352IPR001471AP2/ERF domain
PROSITE profilePS5103217.108289352IPR001471AP2/ERF domain
SMARTSM003801.3E-21289358IPR001471AP2/ERF domain
PRINTSPR003675.2E-6290301IPR001471AP2/ERF domain
CDDcd000181.37E-23387446No hitNo description
PfamPF008473.0E-10387438IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-18387447IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-18388446IPR001471AP2/ERF domain
SMARTSM003801.6E-33388452IPR001471AP2/ERF domain
PROSITE profilePS5103219.467388446IPR001471AP2/ERF domain
PRINTSPR003675.2E-6428448IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MASGNNWLGF SLSGQENPQP HQDSSPVAAI VDISGSSDFY GLPTQPAPDS QLDMPGNHAP  60
YGVMEAFNRS THETHDWNNM RRLDYNGGAS ELSMLVGSSA VGGKIRSAVE EITEPKLEDF  120
LGGNSFVDSE QDQAGAGGFL FSGVPMAPMA GSRTNSNSGS NTMELSMIKT WLRNNQNHVP  180
QPQPQEEMSM STEANASSFG DALGRNGHVE AAAAGSSQSQ SLALSMSTGS GSSHLPMVVA  240
GGSAGGGAAE PESSSSENKR ASGAMDSPGG AVEAVARKSI DTFGQRTSIY RGVTRHRWTG  300
RYEAHLWDNS CRREGQSRKG RQGGYDKEDK AARAYDLAAL KYWGTTTTTN FPINTYEKEV  360
DEMKHMTRQE YIAYLRRNSS GFSRGASKYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS  420
TEEEAAEAYD IAAIKFRGLN AVTNFDMNRY DVKSILESST LPVGGAAIRR LKDAPEATIW  480
RAADMGGVIP HQLTTADVGM MGVGAYAGSY HQGHGWPSTI AFQHHQPSPL SVHYPYALQP  540
PPRGWCKPEQ DDVVVAAASH GLQELQKLHL GTAHNFFQAS AGSTTVYNGG NAAGFLMPGP  600
ASAVVAEQGS YGDEEGKLIG MEYEGMAMAS AGSPYAPEGS ASAVSIARAN GYSNNWTSPF  660
NGMG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G138300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557320.0EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575352.10.0AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A2K2D4500.0A0A2K2D450_BRADI; Uncharacterized protein
STRINGBRADI3G48697.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-117AP2 family protein