PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G126100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 465aa    MW: 50339.4 Da    PI: 7.4475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G126100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19216266256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Brast04G126100.1.p 216 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 266
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.34E-32215275No hitNo description
SMARTSM003805.9E-39216279IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-23216274IPR016177DNA-binding domain
PROSITE profilePS5103222.998216273IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32216274IPR001471AP2/ERF domain
PfamPF008472.8E-12217266IPR001471AP2/ERF domain
PRINTSPR003678.4E-11217228IPR001471AP2/ERF domain
PRINTSPR003678.4E-11239255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEAADRGAGG RGRERRWKGK GASSAAEKQR PLPPQLAPVL EDAPAAALLR PLKKPDCRLH  60
RSVSSLSSAP ASSGSSSVSD PISPPAVGSL PYPSPGSTRH IFPFAYDPSP AAAPRLLQLL  120
QYSSSLYQQP LLPQHLQQQH QQQTPLQNQQ MISFGDAQAQ HEAAPPLFPP QLMAPEALRY  180
WSEALNLSPR GVLGGLVPVP QSLFQHLLRA PAPAKLYRGV RQRHWGKWVA EIRLPRNRTR  240
LWLGTFDTAE DAAMAYDREA FKLRGENARL NFPDLFLGKG RAGGSGRTSA SAAASRSSSS  300
CSSAPPTPDE TRTQQAHQAL LLREQQQRQE HLEEPSDVEL TPLFSAAEEQ EDIPDPQLVH  360
KAEQQCGEGS TAMPQAPVSS GGVWGPADEA WFSAWGPGSS VWDYDMDSAH GLFLQSRFAG  420
EQTGMDYVPS APEVHMAPAP RAASPSPLPP RPPPSHSPTF VWKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20212273163ATERF1
3gcc_A3e-20212273163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G126100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569954.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A0Q3I3P80.0A0A0Q3I3P8_BRADI; Uncharacterized protein
STRINGBRADI3G49810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.14e-38ERF family protein