PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G118000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 298aa    MW: 31242.1 Da    PI: 6.7756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G118000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18145195255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+++AeIrdp  ng  +r++lg+f++ae+Aa a+++a+ +++g
  Brast04G118000.1.p 145 HFRGVRQRP-WGKFAAEIRDPARNG--ARVWLGTFDSAEDAAVAYDRAAYRMRG 195
                         79*******.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.76E-29144203No hitNo description
PROSITE profilePS5103223.63145203IPR001471AP2/ERF domain
PfamPF008473.8E-12145195IPR001471AP2/ERF domain
SMARTSM003804.3E-37145209IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23145205IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-31145203IPR001471AP2/ERF domain
PRINTSPR003678.0E-10146157IPR001471AP2/ERF domain
PRINTSPR003678.0E-10169185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMMLNPASGA AALESIRHQL LELEEPPAAR AAPRPAYCRS TSFGSLVADQ WSESLPFRPN  60
DADDMVVYGA LRDAFSCGWL PDGSFAAVKP EPLPSSPDSY DGSCYLGPFL ASPGPPETPT  120
SMGTREEEEL AEMAAASASS SRGKHFRGVR QRPWGKFAAE IRDPARNGAR VWLGTFDSAE  180
DAAVAYDRAA YRMRGSRALL NFPLRIGSEI AAAAAAVGDK RPCPQPQPAS SDSSSPSSSG  240
STSSGSGPSK RRKRGEAAAA SMAMALVPPP APVQAPVQLT LPAQPWFAAG HVQQLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-37141208168ATERF1
3gcc_A1e-37141208168ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G118000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3683411e-124AK368341.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2072F09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570010.11e-157ethylene-responsive transcription factor 1
TrEMBLI1IC651e-155I1IC65_BRADI; Uncharacterized protein
STRINGBRADI3G50490.11e-156(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-35ethylene responsive element binding factor 1