PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G117600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 336aa    MW: 35577.5 Da    PI: 4.8008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G117600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19135186256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrdp   + +  r++lg+++t  eAa+a+++a+ +++g+
  Brast04G117600.1.p 135 KYRGVRQRP-WGKFAAEIRDP---NrRGSRVWLGTYDTSVEAARAYDRAAFRMRGA 186
                         8********.**********9...4334**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-32134194IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22135194IPR016177DNA-binding domain
CDDcd000186.20E-30135194No hitNo description
SMARTSM003805.4E-37135199IPR001471AP2/ERF domain
PROSITE profilePS5103224.289135193IPR001471AP2/ERF domain
PfamPF008471.2E-14135185IPR001471AP2/ERF domain
PRINTSPR003672.1E-13136147IPR001471AP2/ERF domain
PRINTSPR003672.1E-13175195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTMDFNGDMD DFSLQFIHEQ LMGADACLQL QAVPVAAADD FAQHPQPSDF QLPSDFSLPP  60
PGYVDLASQY ADAEAYGAAE PVMIRFGGEI DSPVPSSDPA RRRPSLTVSL PPASHPGWPL  120
MPEGAADALT NDFRKYRGVR QRPWGKFAAE IRDPNRRGSR VWLGTYDTSV EAARAYDRAA  180
FRMRGAKAIL NFPNEVASRG ATGFPAPLLP AAPIVSHSNK RKRADGDVGE ETISAKHVKA  240
EAANNPAASP ASSLTAAAAS TVTTTTSSRS TAAATPSSSS SPDYYQAGDD SEMMSGPLAS  300
SASWTWEQLL VEGMFGGSLS PHPQLAGFPE VCTVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26134198468ATERF1
3gcc_A1e-26134198468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G117600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076621e-82AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0046761e-82AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBankAP0050061e-82AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149581e-82AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3393781e-82AY339378.1 Oryza sativa (japonica cultivar-group) Ap25 mRNA, complete cds.
GenBankCP0126101e-82CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572768.21e-152ethylene-responsive transcription factor 6
TrEMBLA0A0Q3IJF31e-151A0A0Q3IJF3_BRADI; Uncharacterized protein
STRINGPavir.Aa01181.1.p5e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.19e-36ERF family protein