PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G116400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 251aa    MW: 26284.2 Da    PI: 5.6483
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G116400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-1969119155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Brast04G116400.1.p  69 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 119
                         57*****887.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.10E-2869130No hitNo description
PfamPF008471.2E-1369119IPR001471AP2/ERF domain
PROSITE profilePS5103223.6770128IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-2070129IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-3170129IPR001471AP2/ERF domain
SMARTSM003802.2E-3470134IPR001471AP2/ERF domain
PRINTSPR003675.3E-117182IPR001471AP2/ERF domain
PRINTSPR003675.3E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MESDAPTTSS SSSCDSTVIS GAQETSKKNN LKRKRTATSP ETDVRGEESS CCTAAVDKRA  60
TKSAAGRHPS YRGVRRRSWG KWVSEIREPR KKSRIWLGTF PTAEMAARAH DVAALAIKGG  120
AAHLLNFPHL AAGLPRPASA SPADIQAAAA LAAAQCEPPP ASSSSVDAET ETSASASASA  180
ASSFGIDSEE KAENALFDLP DLLLDLRDGL WCSPTWASAP DEYGEAALHE PLLWAEQCWM  240
DAAAAPVHPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-19681291273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G116400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076622e-83AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0050062e-83AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149582e-83AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3452322e-83AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235787.16e-87ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ79e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLI1IC831e-85I1IC83_BRADI; Uncharacterized protein
STRINGBRADI3G50620.12e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]