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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G116200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 25198.1 Da PI: 5.5955 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.7e-19 | 55 | 104 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p+ + r++lg+f tae+Aa+a++aa+++++g Brast04G116200.1.p 55 TYRGVRMRA-WGKWVSEIREPR----KaSRIWLGTFETAEMAARAHDAAALAIKG 104 69****998.**********94....36***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 55 | 116 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 55 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.945 | 55 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-33 | 55 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-19 | 55 | 115 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.2E-11 | 56 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.25E-18 | 56 | 117 | No hit | No description |
PRINTS | PR00367 | 5.2E-11 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEEEKGALSP ASNASTTNFS NRSGCGSPMM ATSSSSDDSS GGGRKRPRRD LKHPTYRGVR 60 MRAWGKWVSE IREPRKASRI WLGTFETAEM AARAHDAAAL AIKGPRAAAA HLNFPELAND 120 LPRPATAAPE DVRAAAALAA HMDVARAPPP ADTGNAAEAD EPSSRPLPLP AWDGSIASVD 180 LALFDLPDFL HEFGFALPPP PSTTACDLSS WQHDVAATTD DFRFETAPLL LWEHY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 52 | 119 | 11 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G116200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354995 | 4e-85 | AK354995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1014H03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572772.1 | 1e-129 | ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | A0A0Q3FR95 | 1e-128 | A0A0Q3FR95_BRADI; Uncharacterized protein | ||||
STRING | GRMZM2G041839_P01 | 7e-60 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35700.1 | 2e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G116200.1.p |