PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G107300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 645aa    MW: 73362.8 Da    PI: 6.7861
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G107300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1478.3e-1557138190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn+YAk++GF +++s+++         +r  + ++egk +++ ++  +++r ra++++gCka++ vk++ dg  ++++++ eHnH+l+
  Brast04G107300.1.p  57 EFYNAYAKHTGFGLKRSQHNAY-------RRYVRRTREGKYKTSVHD-GERQRGRASKKIGCKAHMGVKMNADGGCVIKSIHFEHNHQLS 138
                         6***************998876.......45556689****999999.99999***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1157138IPR004330FAR1 DNA binding domain
SMARTSM003430.71466483IPR001878Zinc finger, CCHC-type
SMARTSM003432.4582599IPR001878Zinc finger, CCHC-type
SMARTSM003430.073626643IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MQAEIKVQVI CLIGIRCCTN QMSHLPVPSI FGKAPDLPEN LVPAIGQHFR TFDGAFEFYN  60
AYAKHTGFGL KRSQHNAYRR YVRRTREGKY KTSVHDGERQ RGRASKKIGC KAHMGVKMNA  120
DGGCVIKSIH FEHNHQLSLN QCPSLAKAIP QIFPRSLHKL SVLNHPLMPT EFEAAWHELV  180
NKYNLHDVNV MVNLWNERKT WVSAYWKEVF CARMTSTQRS ESMNHVLKKG FVREQHDLHI  240
FAQQVNNCIH TRHESEAAET TASMNTTEFL VHHYNQSREF AWSRHEFRVL TDEAEGIFEC  300
ECKLWEHTDE IPRRYILKRY TKNAVADPVF NRRDYKMTAK DGTSLEYRGM SSDHMFNAGM  360
RAFKEVNSRM DEEGIETNAE ANNHTGEYSE EGPAPSGDIP MTNPAEDDTM KEGTKTYAHA  420
QPPKVAKTKG SRSNKKDEPP APAHATAAAR PEPELDTNGN PRGQRLCSNC NKIARHNART  480
CKKRQTTEKL LEAHQRNVLA KQVLGITDNE QLLDMDEDED YEDQTDDDEN EDDVEDYDEN  540
EDDQGGEGEE EEQCQTEVTN EQTLEATENS KPTPAVPEGQ RTCSICKKKA SHNSRTCPDK  600
DEILKKQLEG QQNSGDKDMV PQGKRTCSNC GKIRGHNART CKKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G107300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K2DMV30.0A0A2K2DMV3_BRADI; Uncharacterized protein
STRINGBRADI3G17240.11e-177(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1640124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-10FAR1-related sequence 5