PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G106600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 794aa    MW: 85558.8 Da    PI: 5.3792
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G106600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.3e-2191146156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++eLe+lF+++++p++++r+eL+++l+L+ rqVk+WFqNrR+++k
  Brast04G106600.1.p  91 KKRYHRHTPQQIQELEALFKECPHPDEKQRAELSRRLSLDARQVKFWFQNRRTQMK 146
                         678899***********************************************999 PP
2START179.12.5e-563055361206
                         HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...........SCEEEEEEEECCSCH.HHHHHHHHCCCGGCT-TT-S... CS
               START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..........dsgealrasgvvdmv.lallveellddkeqWdetla... 77 
                         ela +a++el+k+a+ ++p+Wv+   +++++e+l  +e   +          + +ea+r+sg+v+ + ++ lve+l+d + +W+ ++    
  Brast04G106600.1.p 305 ELAISAMDELIKMAQMDDPLWVTGLPGSPNKETLNFEEYHSFlpgigmkpagFVSEASRESGLVIIDnSVALVETLMDER-RWSDMFScmi 394
                         57889********************7777777776665554477777***************998651669*********.********** PP

                         .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEE CS
               START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgilie 155
                          ka++le +s+g      g l lm+aelq+lsplvp R++ f+R+++ql +g w++vdvS+d     ++     ++   ++++lpSg++++
  Brast04G106600.1.p 395 aKATILEEVSTGiagsrnGSLLLMKAELQVLSPLVPiREVIFLRFCKQLAEGAWAVVDVSIDGLMRDQNsatasTAANLKCRRLPSGCVMQ 485
                         *************************************************************954333222356788899************ PP

                         EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         +++ng +kvtwveh++++++++h+ +r+l++sgla+ga++w+atlqrqce+
  Brast04G106600.1.p 486 DTPNGCCKVTWVEHTEYDEASVHQFYRPLLRSGLAFGASRWLATLQRQCEC 536
                         *************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-2174148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-2378148IPR009057Homeodomain-like
PROSITE profilePS5007118.12388148IPR001356Homeobox domain
SMARTSM003891.5E-1989152IPR001356Homeobox domain
CDDcd000865.22E-1990148No hitNo description
PfamPF000469.3E-1991146IPR001356Homeobox domain
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
SuperFamilySSF559616.05E-30296536No hitNo description
PROSITE profilePS5084845.799296539IPR002913START domain
CDDcd088751.62E-110300535No hitNo description
SMARTSM002347.2E-39305536IPR002913START domain
PfamPF018526.7E-49306536IPR002913START domain
SuperFamilySSF559616.05E-22556760No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MSFGGLFDGG GGGMQFPYPG GFSSSPALSL ALDNAGGRDG GIGGRMFADG AMAGDAEAQN  60
DSRSGSDHLD AISGVGDDDD DAEPSNPRKR KKRYHRHTPQ QIQELEALFK ECPHPDEKQR  120
AELSRRLSLD ARQVKFWFQN RRTQMKTQLE RHENALLKQE NDKLRAENMT IREAMRSPMC  180
GGCGSPAMLG EVSLEEQHLR IENARLKDEL NRVCALATKF LGKPVSLMSP LQLQPHLSMH  240
LPNSSLELAV GGMGGIGSMQ PTLHGTMSEF AGGASSSMGT VITPARATGC AIASITDIDR  300
SMFLELAISA MDELIKMAQM DDPLWVTGLP GSPNKETLNF EEYHSFLPGI GMKPAGFVSE  360
ASRESGLVII DNSVALVETL MDERRWSDMF SCMIAKATIL EEVSTGIAGS RNGSLLLMKA  420
ELQVLSPLVP IREVIFLRFC KQLAEGAWAV VDVSIDGLMR DQNSATASTA ANLKCRRLPS  480
GCVMQDTPNG CCKVTWVEHT EYDEASVHQF YRPLLRSGLA FGASRWLATL QRQCECLAIL  540
MSSTVAANEP MAISLEGKRS MLKLARRMTD NFCAGVSASS AREWSKLDGA TGSIGEDVRV  600
MARKSVSEPG EPPGVVLSAA TSVWVPVAPE KLFDFLRDEQ LRAEWDILSN GGPMQEMTRI  660
AKGHQNGNSV SLLRASAMSA NQSSMLILQE TCTDASGSIV VYAPVDIPAM QLVMEGRDST  720
CVALLPSGFA ILPDGPSIEQ KTGGSLLTVA FQILVNSQPT AKLTVESVET VNNLISCTIK  780
KIKTALLCAT PDC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692PRKRKKR
28791RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G106600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8574840.0KF857484.1 Avena strigosa cultivar S75 homeobox-leucine zipper protein (HDZ1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570085.10.0homeobox-leucine zipper protein ROC5
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLI1ICJ50.0I1ICJ5_BRADI; Uncharacterized protein
STRINGBRADI3G51540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]