![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast04G052200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 648aa MW: 70999.4 Da PI: 4.2718 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.6 | 2.5e-49 | 14 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratks 80 l+pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y++ePwdLp +++++++++wyfF++ d+k a g+r+nrat + Brast04G052200.2.p 14 LAPGFRFHPTDEELVSYYLRRRVLGRRLRI-DAIAEVDLYRLEPWDLPslSRIRSRDSQWYFFARLDRKVAgagaggrggPGNRTNRATPR 103 579***************************.99***************5448999999***********99877777665577******** PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWk+tgkd+ev++ +g++vg+kktLvf+ grapkg +t+Wvmheyrl Brast04G052200.2.p 104 GYWKTTGKDREVFH-RGKAVGMKKTLVFHAGRAPKGDRTNWVMHEYRL 150 **************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-56 | 11 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.804 | 14 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-27 | 16 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 648 aa Download sequence Send to blast |
MSPSLPDHSP EVPLAPGFRF HPTDEELVSY YLRRRVLGRR LRIDAIAEVD LYRLEPWDLP 60 SLSRIRSRDS QWYFFARLDR KVAGAGAGGR GGPGNRTNRA TPRGYWKTTG KDREVFHRGK 120 AVGMKKTLVF HAGRAPKGDR TNWVMHEYRL LDNDGPQDLH VVCRIFQKVG TGPQNGAQYG 180 APYMEEEWEE EDDATENAPA NGASTEMAAT TDTASPESNV EDENMYSKTN ELVQTQEVLN 240 PPDTAPLLAQ GLETDEGSYG DGVISLEEIL QEPVSNVSVE NIGEPEEQTA IDDHFSLADL 300 SGYPSQDDGY VGHNGPIICR DPSNGDHAYW PLRTYGNQNH ANGTLNAEEF FDTGNDTNTY 360 SVQQQICPSN GQNLYLQTNG LPAPQQVDDN MAFYDASSTH KWVDGKDDFA NVNELLYQPE 420 NEPLFDVDDL MAYFDAAEDE LKFDMLGPVE GPNCQLPDNM LEFAPKNENM DGFTFDGISK 480 TSANVQYVAS SSGSHENLYP DTAVPDIPMD DNADKSFGKR FASVLGSIPA PPAMASEFPP 540 ATGKSVASLS AVNGPSSIHV TAGIVQLGGL TFSGSSEHWP LQKNGDFSLL LSFTVESDVS 600 TKSIGFDEPA TQLSTVPMVL RGGLYLFFVS AMILMLSYKV GSCIYSR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-43 | 7 | 150 | 8 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast04G052200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570443.1 | 0.0 | NAC domain-containing protein 78 | ||||
TrEMBL | I1IE75 | 0.0 | I1IE75_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G56080.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 8e-77 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast04G052200.2.p |