PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G050700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 333aa    MW: 36069.6 Da    PI: 4.3679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G050700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.11e-2078131356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  Brast04G050700.1.p  78 KKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 131
                         5678*************************************************9 PP
2HD-ZIP_I/II130.85.2e-4277169193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktk lE+d+++Lk+++dal++++++L +++++Lr+++
  Brast04G050700.1.p  77 EKKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKTLERDFDRLKASFDALRADHDALLQDNHRLRSQV 167
                         69***************************************************************************************99 PP

         HD-ZIP_I/II  92 ke 93 
                         ++
  Brast04G050700.1.p 168 ET 169
                         76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.05E-2070133IPR009057Homeodomain-like
PROSITE profilePS5007118.28573133IPR001356Homeobox domain
SMARTSM003891.8E-2076137IPR001356Homeobox domain
PfamPF000465.3E-1878131IPR001356Homeobox domain
CDDcd000862.63E-2078133No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2279139IPR009057Homeodomain-like
PRINTSPR000312.1E-6104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000312.1E-6113129IPR000047Helix-turn-helix motif
PfamPF021832.5E-16133175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEPGRLIFNT SGSGAGQMLF LDCGAGGIGA GAAAAMFHHR GGRPVLGMEE GRGVKRPFFT  60
SPDDLLEEEY YDEQLPEKKR RLTPEQVHLL EKSFEEENKL EPERKTELAR KLGLQPRQVA  120
VWFQNRRARW KTKTLERDFD RLKASFDALR ADHDALLQDN HRLRSQVETL TEKMQEKEAP  180
VSGGGAAMDA SEQLPPEDEA TKASADAEEQ QAAAEAFDEA LLQQVKAEDR LSTGSGAGSA  240
VLDADALLGA VVDSSVESYS CFPPGGAAEE FRRHDCAVGG AGGGIQSEED DGAGSDEGCS  300
YDAAGVFFGA GHHHADQDEE EDGGQISWWM WN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G050700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195921e-180AK119592.1 Oryza sativa Japonica Group cDNA clone:002-117-D05, full insert sequence.
GenBankAY5590451e-180AY559045.1 Oryza sativa homeodomain leucine zipper protein 16 (hox16) mRNA, complete cds.
GenBankCU4059601e-180CU405960.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572981.10.0homeobox-leucine zipper protein HOX16
SwissprotA2X9801e-125HOX16_ORYSI; Homeobox-leucine zipper protein HOX16
TrEMBLI1IE890.0I1IE89_BRADI; Uncharacterized protein
STRINGBRADI3G56180.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-54homeobox 1