PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G048900.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 407aa    MW: 44314 Da    PI: 8.6219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G048900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.11.2e-16157206255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR +iN++++ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Brast04G048900.2.p 157 RSKHSATEQRRRTKINDRLDILRELLPNC----DQKRDKASFLLEVIEYIRLLQ 206
                         889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.71E-14153210No hitNo description
SuperFamilySSF474594.06E-18153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-20154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.123155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-14157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-10161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MELFQGEEPA HDFLSLRAGG SSPFQHRLQS AQRGYGLGPH SLVKPAEPVK QPSSHGGAAG  60
DGAVSAAADL GEQVLPGGVG TFSIRQVPDA QPREEAGMGR DASVHHGSSM EIAHEARSGP  120
MVRSAPSTMW QDSGVDKRSR AARSSGSSAD QEPSSPRSKH SATEQRRRTK INDRLDILRE  180
LLPNCDQKRD KASFLLEVIE YIRLLQEKCQ KYESAIPEKN HTDSKSMAWD KVYCRSRWRN  240
TQNISQGQGG GLSATTEEMN KEQHNSPKGI TAAPASLFST QSVKETSTTA SSSHNITENS  300
TPNNQLSWLS MSTMNKNSDV SNSKLSKQET PSLHNDTESL SSAYSQGLLH KLKEALQKSG  360
VDPSQANISV EINMDKRARA NAHIHDNTKA NEGKEPMHIT KRLRCD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G048900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236005.20.0transcription factor BIM2 isoform X3
TrEMBLA0A0Q3FQ450.0A0A0Q3FQ45_BRADI; Uncharacterized protein
STRINGBRADI3G56340.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.33e-38bHLH family protein