PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G048500.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Dof
Protein Properties Length: 284aa    MW: 28890.1 Da    PI: 8.1342
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G048500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.66.6e-3948107362
              zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         ++ +kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+ s
  Brast04G048500.2.p  48 QEVVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRGS 107
                         6789****************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2747105IPR003851Zinc finger, Dof-type
PfamPF027011.9E-3349105IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.49751105IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQDFQSIPGL AGRLFGGAAD IRRAGAHQLQ QGAAAAASRC GGGGGFSQEV VKCPRCESTN  60
TKFCYYNNYN LSQPRHFCKS CRRYWTKGGV LRNVPVGGGC RKSKRGSSSS ATPTSPTATA  120
TDNSNAKSQR RASSSSRDSN SGSNSPTATA PPPPSTPSSV AFANPFAGDV PPPAPIFADQ  180
AAALASLFAP PAPPPLPVFS FSPQPAAKTE GSAAVGSVPP VAAVLLAAEP EAPGASEPAD  240
MAPFMSLDTG IFELGDDASV ASYWNAGSCC WGTDGQDPSV YLP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G048500.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:11470159}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9554931e-76AY955493.2 Triticum aestivum Dof1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570468.11e-107dof zinc finger protein 4
SwissprotQ6Z3451e-85DOF4_ORYSJ; Dof zinc finger protein 4
TrEMBLA0A2K2D5C71e-105A0A2K2D5C7_BRADI; Uncharacterized protein
STRINGBRADI3G56380.11e-107(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.18e-33OBF binding protein 4
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]