PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast04G048500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 284aa MW: 28890.1 Da PI: 8.1342 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.6e-39 | 48 | 107 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+ s Brast04G048500.1.p 48 QEVVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRGS 107 6789****************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 47 | 105 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-33 | 49 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.497 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 53 | 89 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 284 aa Download sequence Send to blast |
MQDFQSIPGL AGRLFGGAAD IRRAGAHQLQ QGAAAAASRC GGGGGFSQEV VKCPRCESTN 60 TKFCYYNNYN LSQPRHFCKS CRRYWTKGGV LRNVPVGGGC RKSKRGSSSS ATPTSPTATA 120 TDNSNAKSQR RASSSSRDSN SGSNSPTATA PPPPSTPSSV AFANPFAGDV PPPAPIFADQ 180 AAALASLFAP PAPPPLPVFS FSPQPAAKTE GSAAVGSVPP VAAVLLAAEP EAPGASEPAD 240 MAPFMSLDTG IFELGDDASV ASYWNAGSCC WGTDGQDPSV YLP* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast04G048500.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:11470159}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY955493 | 1e-76 | AY955493.2 Triticum aestivum Dof1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570468.1 | 1e-107 | dof zinc finger protein 4 | ||||
Swissprot | Q6Z345 | 1e-85 | DOF4_ORYSJ; Dof zinc finger protein 4 | ||||
TrEMBL | A0A2K2D5C7 | 1e-105 | A0A2K2D5C7_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G56380.1 | 1e-107 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6496 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60850.1 | 8e-33 | OBF binding protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast04G048500.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|