PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G042200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 1046aa    MW: 118237 Da    PI: 6.9999
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G042200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.81.7e-21936996259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDg++WrKYG Kev g++ prsY++C ++   gC+++k+v+ +++dp +++++Y g+H++ 
  Brast04G042200.1.p 936 DDGFRWRKYGMKEVMGATQPRSYFQCVQKyaeGCRARKEVQPTDSDPLLFHVVYLGDHTCA 996
                         8**************************98889***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147983.62E-2812139No hitNo description
SuperFamilySSF525408.07E-59164442IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.1E-21184358IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.7E-59197467IPR002182NB-ARC
PRINTSPR003646.1E-16202217No hitNo description
PRINTSPR003646.1E-16278292No hitNo description
PRINTSPR003646.1E-16375389No hitNo description
SuperFamilySSF520584.76E-33506890IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.8E-20578714IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003646.1E-16632648No hitNo description
Gene3DG3DSA:3.80.10.101.8E-20775890IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5081120.346930993IPR003657WRKY domain
SuperFamilySSF1182903.27E-19933997IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-21933997IPR003657WRKY domain
SMARTSM007741.3E-25935997IPR003657WRKY domain
PfamPF031063.1E-20936995IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MEAAAAVSVS RGALGSLLRK LCDLLASEYK LLKQVRGEIM FLKAELESMH AFLERMSEAE  60
EEPDKQAKCW MEQVRELSYN IEDSVDEFML CIQRDPDSKP HGFRGFIEKS INFLTNINTR  120
HKICKEFQGL KSRVTEVNER RMRYTAAENV AVVTKPSHTA MDLRLLSLYS ETTGVVGIDG  180
PRDELIKIMM DGDSVSAQQL KVLSIVGFGG LGKTTLANGI CRNIEGQFQH RAIVSVSQKP  240
NVWKIFRSIL SQAGFVAPEN TNMETWSEDQ VFTTLQNFLT NKRYFIVIDD IWDETAWNII  300
RSALPNNMNG SRVLTTTRID SVARVCCSNH YDYVYQMKSL SDQDSKKLFF SRVFGSEDAC  360
PPYLQEVSAK ILKRCGGLPL AVITISSILA SKRNKLKDHW EHVLNSLSSN FEVNPTLEGM  420
RQILNLSYIN LPRYLRTCML YLGIYPEDCT IDKNDLVRQW VAQGFISRLH GQDPENVADG  480
YFNELVNMSI IQPVDTDPNN EVLSCRVHDM MLDLIVHKCR EENFITVTDD LQAMAGVHNK  540
VRRLSLYLDG VVDATVFGTT QLSQVRALAR FGTSTYAPPL LDFKHLRVLT LEFPSGNPEP  600
VIIDLTGMHH LFQLKYLKIV TECEIALPKK IRGLEQLETL ELRTSSMVEI PTDVVHLSRL  660
LHLVIPQVSH LPSGIGNMKS LRTLREFSLG LNSIDSIRDL GDLTNLRDLQ ISSFGLQLDD  720
MEKGRRMDVL KHSLEKLCNL KYLRMDPHLP SICRDALSSM SASPCLLQRV HIWCMLSRVP  780
KWIGELHNLY DLELVVEVLD DFAILTQLHS LVHLKLHAEG TLKDKVTICG SGFIVLKHFS  840
ISYIRISNLA FEAGAMPKLQ RLEVRFNEKY GGAPVGIEHL SGLREFSVSN RGYDAEESRT  900
SVSRSALRNA MDMHPCRPAA SIRRGGTSQF LHNFNDDGFR WRKYGMKEVM GATQPRSYFQ  960
CVQKYAEGCR ARKEVQPTDS DPLLFHVVYL GDHTCAQSAH PQQPSQVSEG SKATEDGLKR  1020
LKRDPASTGD VMDLDADCWE NCGYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C5e-58177229703Disease resistance RPP13-like protein 4
6j5t_F5e-58177229703Disease resistance RPP13-like protein 4
6j5t_G5e-58177229703Disease resistance RPP13-like protein 4
6j5t_L5e-58177229703Disease resistance RPP13-like protein 4
6j5t_O5e-58177229703Disease resistance RPP13-like protein 4
6j5u_A5e-58177229703Disease resistance RPP13-like protein 4
6j5v_A5e-58177229703Disease resistance RPP13-like protein 4
6j5w_A5e-58177229703Disease resistance RPP13-like protein 4
6j6i_C5e-58177229703Disease resistance RPP13-like protein 4
6j6i_F5e-58177229703Disease resistance RPP13-like protein 4
6j6i_G5e-58177229703Disease resistance RPP13-like protein 4
6j6i_L5e-58177229703Disease resistance RPP13-like protein 4
6j6i_O5e-58177229703Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G042200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193469.10.0putative disease resistance RPP13-like protein 3
TrEMBLN1QTE80.0N1QTE8_AEGTA; Disease resistance protein RPM1
STRINGEMT033420.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-20WRKY DNA-binding protein 46