PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G034200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 323aa    MW: 35265.9 Da    PI: 4.4387
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G034200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57340.67.3e-13145233498
              DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkv.sksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                          r+ws +De+ +L +l   ++++g+ p+   da+++ + ++++ ++  +++l +K   L++++++ vk+   g+  + +kehd+  ++ls 
  Brast04G034200.1.p 145 PRIWSTDDEVRILEALAAHRQDHGVLPQP--DALMDALAGKLDNRAyGSKELQSKQTTLRQRYNNAVKR---GE--VPTKEHDRRLYDLSD 228
                         69**********************87766..58999999999876516889******************...44..5689*********** PP

              DUF573  94 kiWgs 98 
                         ++Wgs
  Brast04G034200.1.p 229 IVWGS 233
                         ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.0E-19145232IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAPKRGAKSS APPPPPPPPP AASSEESGSR SRSEETEDEE AAVVSPPPPT RNPPAPPQNG  60
EDSESSDDEE EEEDDEEEPA RAAPVTAPKN PPPAPQQQGE ESDEEGESSE SDEDAPPPEQ  120
APKVAAEKLK PPPSSGEAKK PGGIPRIWST DDEVRILEAL AAHRQDHGVL PQPDALMDAL  180
AGKLDNRAYG SKELQSKQTT LRQRYNNAVK RGEVPTKEHD RRLYDLSDIV WGSGKTAAAK  240
NGDDPRSFAE MCELYPYLAE EVKELEGEYP GMFKREFVKI NGDRARAMDA KIKRQRLVQM  300
KVEMRRGDLA KEVSKTLIEL LD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290295KIKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G034200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311955.11e-148uncharacterized protein LOC100829980 isoform X2
RefseqXP_024311956.11e-148uncharacterized protein LOC100829980 isoform X2
TrEMBLA0A0Q3I5L81e-140A0A0Q3I5L8_BRADI; Uncharacterized protein
STRINGBRADI5G00487.11e-148(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-09DNA-binding storekeeper protein-related transcriptional regulator