PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G017700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 90aa    MW: 9975.24 Da    PI: 9.335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G017700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-0816551554
                        HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +iN+ +++L++llP++ + +s   s    L++++ YIksL
  Brast04G017700.1.p 16 EINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSL 55
                        7**************77899999****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.334155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-101571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-101578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-61655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSRSRPSRG AISEEEINEL ISKLQSLLPN SRRRGSSQAS TTKLLKETCS YIKSLHREVD  60
DLSDRLSDLM STMDHNSPGA EIIRSILRS*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G017700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1003051e-107FP100305.1 Phyllostachys edulis cDNA clone: bphyst024b19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570648.17e-50transcription factor ILI5
SwissprotA2X9L82e-47ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX02e-47ILI5_ORYSJ; Transcription factor ILI5
TrEMBLF2EHK46e-50F2EHK4_HORVV; Predicted protein
STRINGMLOC_55094.11e-50(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-17bHLH family protein