PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G012500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 434aa    MW: 48007.2 Da    PI: 8.1214
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G012500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.35.5e-2347112171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         rk+ksL+ll+++f++++ +   + + l+++a++L    v  +rRRiYDi+NVLe+++++e+k+kn++ w+g
  Brast04G012500.1.p  47 RKQKSLGLLCSNFVAMYDRDGVECIGLDDAARRL---GV--ERRRIYDIVNVLESIGILERKAKNRYCWIG 112
                         79*****************999************...**..****************************98 PP
2E2F_TDP75.26.6e-24191270171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek....kekneirwkg 71 
                         rkeksL+lltq+f+kl+ + e +++tl+e++k L+ e     ++++k RR+YDi+NVL++ln iek    ++k+++rw g
  Brast04G012500.1.p 191 RKEKSLGLLTQNFVKLFLTMEVDTITLDEASKLLLGEgheesNMRTKFRRLYDIANVLSSLNFIEKtqadTRKPAFRWLG 270
                         79*****************************************************************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-2643113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.13E-1746111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.9E-2947112IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-2048112IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-21188271IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-28191270IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-19192270IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.98E-13193271IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAATTSSSPT AEASVETAAA APRPKPEPEP PLPMVFAAKL RDHAYSRKQK SLGLLCSNFV  60
AMYDRDGVEC IGLDDAARRL GVERRRIYDI VNVLESIGIL ERKAKNRYCW IGFGGVPMAL  120
RELKERALRE RSGLAPLPVE DPSAANMSDD EDDDKLGNPE GDTENEKPSQ TLDNLSDKPG  180
APICRLRSDH RKEKSLGLLT QNFVKLFLTM EVDTITLDEA SKLLLGEGHE ESNMRTKFRR  240
LYDIANVLSS LNFIEKTQAD TRKPAFRWLG TAGKAKAENG VTVAVDPPRK TMSNKRAFGT  300
ELTNIGINRS KVDSSVQKKA KLAQSCSDIL KNDKIDVQSQ VGPVKTTDFA YGPFHPTSAR  360
KQEPNGCHGA GQRESAQDWE SLADSFRPQY QNQALGDLFS HYVEAWKSWH SEFAQGSRIM  420
QQQLGKSVIN QLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-34462643232Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G012500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756946.10.0LOW QUALITY PROTEIN: E2F transcription factor-like E2FF
TrEMBLA0A0Q3FSI10.0A0A0Q3FSI1_BRADI; Uncharacterized protein
STRINGBRADI3G59740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.22e-94DP-E2F-like 1