PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G006800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 341aa    MW: 36587.5 Da    PI: 7.1118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G006800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+ ++   G+g +W + ++++g++R++k+c++rw++yl
  Brast04G006800.1.p 14 KGPWSPEEDAKLKAYIDDNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding391.8e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T+eE+ ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Brast04G006800.1.p  69 GDFTEEEEHIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.333962IPR017930Myb domain
SuperFamilySSF466894.6E-2512109IPR009057Homeodomain-like
SMARTSM007176.8E-111364IPR001005SANT/Myb domain
PfamPF002491.6E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-231569IPR009057Homeodomain-like
CDDcd001674.67E-81662No hitNo description
PROSITE profilePS5129421.92463117IPR017930Myb domain
SMARTSM007172.9E-1067115IPR001005SANT/Myb domain
PfamPF002494.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2370117IPR009057Homeodomain-like
CDDcd001675.04E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWSPE EDAKLKAYID DNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTEEEEHIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
RAPSRRAPRA LQQLHHDPPP SSSSYLAAAP GALSSSALER IQLHMRLQQG LYSTAMPLWA  180
PPPKLETTDA IAMTTTTVSA LQQQQIPDDQ SLLLNYSSSS TAAELAAEVA ACNGAALEMS  240
PGGSSMAGNV NAIAGFGSSY GHVDELYDFL YSKHSAAAVG AFQGGMIIPP LPELQCCPDV  300
VGADEKFSAW TAAACEFGTT TGGQIDSINN LQGFVLGYDQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G006800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573138.11e-150transcription factor MYB41
TrEMBLA0A0Q3FVD61e-149A0A0Q3FVD6_BRADI; Uncharacterized protein
STRINGTraes_6AL_FF1508B19.11e-131(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-79myb domain protein 84