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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G311400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 23556.2 Da PI: 8.4602 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 39 | 89 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f ta +Aa+a++aa+k+l+g Brast03G311400.1.p 39 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFSTALDAARAYDAAAKALYG 89 679****999.**********8...3.35************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.6E-33 | 40 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.692 | 40 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-28 | 41 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 41 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.51E-15 | 41 | 72 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-20 | 41 | 97 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-9 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MERAARRSNN GSGSRKCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG KWVAEIREPN 60 RGARLWLGTF STALDAARAY DAAAKALYGD CARLNLAPNP NPPPAAPPKS SSSGSTTTTQ 120 LQSSSSNYDY DYFNGNGNGG WVSAAAPPVA EEEDFETYVT RLPKPEDFGL QAFLPLEVLA 180 DEASSSSAAQ AQAQAPGNVS IWEISSFEFV PDMLPLAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-14 | 41 | 96 | 6 | 62 | ATERF1 |
3gcc_A | 5e-14 | 41 | 96 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G311400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108143 | 3e-82 | AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence. | |||
GenBank | AP004623 | 3e-82 | AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05. | |||
GenBank | AP005411 | 3e-82 | AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16. | |||
GenBank | AP014964 | 3e-82 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339375 | 3e-82 | AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds. | |||
GenBank | CP012616 | 3e-82 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571275.1 | 3e-77 | dehydration-responsive element-binding protein 2C | ||||
Swissprot | Q84ZA1 | 1e-71 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | I1I048 | 8e-76 | I1I048_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G12680.1 | 1e-76 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 4e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G311400.1.p |
Publications ? help Back to Top | |||
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