PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G292700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 232aa    MW: 24723.3 Da    PI: 6.679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G292700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-2068117255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa+++++g
  Brast03G292700.1.p  68 RYRGVRRRP-WGKWAAEIRDPV----KaARVWLGTFSTAEDAARAYDAAALRFKG 117
                         7********.**********64....55************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-2168127IPR016177DNA-binding domain
PfamPF008474.0E-1368117IPR001471AP2/ERF domain
SMARTSM003805.9E-3668132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3168126IPR001471AP2/ERF domain
PROSITE profilePS5103225.80468126IPR001471AP2/ERF domain
PRINTSPR003677.9E-126980IPR001471AP2/ERF domain
CDDcd000182.66E-1276126No hitNo description
PRINTSPR003677.9E-1291107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVAALTHVIS SGGAPAAVQG GVSRQQVATT CQQFYTAPPP PMAAPAFAAP STASEEQRAE  60
EHQAETRRYR GVRRRPWGKW AAEIRDPVKA ARVWLGTFST AEDAARAYDA AALRFKGPDK  120
AKLNFPLPSQ PLAGVSSHVM SPPQRRPATA AIDDDAAAAG RGDQEELSCF FPDISRYAHI  180
LQSGDDDHDV FRDHQHFDGG GGGGGLAPHG HYSAEEEHRP PSTWPEKSPG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2164127164ATERF1
3gcc_A3e-2164127164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G292700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0642521e-53AK064252.1 Oryza sativa Japonica Group cDNA clone:002-105-C06, full insert sequence.
GenBankAP0044641e-53AP004464.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0665C04.
GenBankAP0149641e-53AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3418271e-53AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
GenBankCP0126161e-53CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755421.11e-108ethylene-responsive transcription factor ERF110
SwissprotQ9FH542e-26EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0Q3HZZ71e-106A0A0Q3HZZ7_BRADI; Uncharacterized protein
STRINGBRADI3G41543.11e-108(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5020322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.13e-17ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]