PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G289100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SBP
Protein Properties Length: 409aa    MW: 43217.1 Da    PI: 7.4403
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G289100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.1e-40103179278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+  rfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk+q+
  Brast03G289100.1.p 103 CAVDGCRADLSRCRDYHRRHKVCEAHSKTPVVAVAGRDMRFCQQCSRFHLLTEFDETKRSCRKRLDGHNRRRRKPQP 179
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-3495164IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.855100177IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.67E-38101182IPR004333Transcription factor, SBP-box
PfamPF031103.9E-30103176IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDWDLKMPAA GAAWDLAELE QGGGGGPAAD GIAAAAASAA GGGGRAECSV DLKLGGLGEA  60
QAQVQAQDSS IRGGKAPAPA PGKRPRAAAA AASSGQGQQC PSCAVDGCRA DLSRCRDYHR  120
RHKVCEAHSK TPVVAVAGRD MRFCQQCSRF HLLTEFDETK RSCRKRLDGH NRRRRKPQPD  180
PMNSASFMTS QQGTRFSPFP NPRPEQSWPG IIKTEESPYY AHQIPIGISN RQHFGGSTST  240
YAKEGRRFPF LQEGEINFAT GVALEPSVCQ PHLKTSAPPD SSGSSKMFSD GLTPVLDSDC  300
ALSLLSAPAN SSGIDVGRMV QVQQTEHIPI AQPLVSSLQF SSSSWFARSQ AATGAVPPTG  360
FSCPVTENEQ LNTVLSSDNN DMNYSGIFHV GGEGSSDGTP PSLPFTWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261031761184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159176KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G289100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574825.10.0squamosa promoter-binding-like protein 16
SwissprotQ6YZE81e-162SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBLI1I8X20.0I1I8X2_BRADI; Uncharacterized protein
STRINGBRADI3G41250.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-40SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY
    High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice.
    Theor. Appl. Genet., 2011. 122(8): p. 1489-96
    [PMID:21327937]
  3. Wang S, et al.
    Control of grain size, shape and quality by OsSPL16 in rice.
    Nat. Genet., 2012. 44(8): p. 950-4
    [PMID:22729225]
  4. Wang S, et al.
    The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.
    Nat. Genet., 2015. 47(8): p. 949-54
    [PMID:26147620]
  5. Wang Y, et al.
    A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.).
    Planta, 2016. 243(2): p. 459-71
    [PMID:26474992]
  6. Lee CM, et al.
    Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters.
    Rice (N Y), 2015. 8(1): p. 33
    [PMID:26519289]
  7. Bessho-Uehara K, et al.
    Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74
    [PMID:27466405]