PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G263200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Dof | ||||||||
Protein Properties | Length: 261aa MW: 26754.7 Da PI: 5.866 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.3 | 2.5e-36 | 53 | 110 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lr vPvGgg+rk+ +s Brast03G263200.1.p 53 EGEACPRCESRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRCVPVGGGTRKRASS 110 5679**************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-23 | 53 | 106 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-30 | 55 | 108 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.652 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MQEHAAAEPG RRPAQQQFAG VDLRRPKGYV AAAAAAPAKT PAAAPAAAAA AAEGEACPRC 60 ESRDTKFCYY NNYNTSQPRH FCKGCRRYWT KGGTLRCVPV GGGTRKRASS TASSAASAIK 120 RQKPSKKRRV APPEPAAAAA SSADDVPAPD ADAGAKTTAE TTTTTPPTEA ASEITTELVV 180 PAAAAEEDSF TDLLQQQGGD DAVALDLGFS DYASAVGKAA GLGMGDPYSF EWPPAFDLGA 240 CWSGAGFADP DPTGVFLNLP * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G263200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755598.2 | 1e-111 | dof zinc finger protein MNB1A, partial | ||||
Swissprot | P38564 | 1e-69 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | I1I847 | 1e-110 | I1I847_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G38980.1 | 1e-111 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-28 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G263200.1.p |
Publications ? help Back to Top | |||
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