 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Brast03G258700.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 258aa MW: 27877 Da PI: 4.4039 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast03G258700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.2 | 1.6e-19 | 48 | 101 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le Fek++++ e++++LA+ lgL+ rqV vWFqNrRa++k
Brast03G258700.1.p 48 KKRRLSVEQVRALEGSFEKDNKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 101
456899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 130.2 | 8.2e-42 | 47 | 139 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls eqv++LE sFe+++kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+d++aL++++dal++++++L++++++L +e+
Brast03G258700.1.p 47 EKKRRLSVEQVRALEGSFEKDNKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDHAALRQSFDALRADHDALRRDKDALLAEV 137
69**************************************************************************************999 PP
HD-ZIP_I/II 92 ke 93
k+
Brast03G258700.1.p 138 KA 139
86 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009637 | Biological Process | response to blue light |
| GO:0030308 | Biological Process | negative regulation of cell growth |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MRRLVASRAG GPPVFPMAPT DDGFAGVGME EDDADEDMAV CGGGAGEKKR RLSVEQVRAL 60
EGSFEKDNKL EPERKARLAR DLGLQPRQVA VWFQNRRARW KTKQLERDHA ALRQSFDALR 120
ADHDALRRDK DALLAEVKAL KAKLLGDDDE DGAAVASFSS VKEETAAAQG SSESDSSEVL 180
NDAAVPPPPD DKATPTPAKA VVPEMGLYAV HGQQLLLKVE DDEAAFLGDD DAACGGFFVD 240
EQPPSLPWWT EPTDPWA*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 72 | 78 | ERKARLA |
| 2 | 95 | 103 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK068244 | 1e-118 | AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence. |
| GenBank | AK106818 | 1e-118 | AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence. |
| GenBank | CT829446 | 1e-118 | CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence. |
