PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G256800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 297aa MW: 31549.4 Da PI: 7.1248 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.7 | 5.6e-33 | 57 | 112 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eClkNhA+ +GghavDGCgEfm++ geeg+++al CaACgCHRnFHR+e++e Brast03G256800.1.p 57 GVRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALSCAACGCHRNFHRKESDE 112 68**************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 9.0E-24 | 43 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.6E-29 | 58 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-29 | 59 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.699 | 60 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.74E-21 | 218 | 292 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-33 | 220 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-26 | 231 | 287 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MDFDEHDEGD GDEEMAPMPV SSSYEAPPAL HPGIAHGVPV PKPGESGGGR FFRAPGGVRY 60 RECLKNHAVG IGGHAVDGCG EFMAAGEEGS IDALSCAACG CHRNFHRKES DESPTAAAAA 120 GAITPFGAMP PLPGHHQFSH YYRTPTGYLH YPQQQMAAAM AAGHFQQQQQ RPLALPSTSH 180 SGGGRDELAA NADVDMSGMM LSPVVMGSMS MAGLSFGSAG GPSGSGGSSG KKRFRTKFSQ 240 EQKERMQAFA DRLGWRIQKH DEAAVQQFCE EVGVKRHVLK VWMHNNKHTL GKKPLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-27 | 232 | 289 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G256800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963277 | 2e-75 | EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003574645.1 | 1e-137 | zinc-finger homeodomain protein 1 | ||||
Swissprot | A2Z259 | 1e-103 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | I1I7X8 | 1e-136 | I1I7X8_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G38430.1 | 1e-137 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-31 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Brast03G256800.1.p |