PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G254200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 350aa    MW: 36905.8 Da    PI: 7.3702
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G254200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.67.6e-15271321555
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                         +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++
  Brast03G254200.1.p 271 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNEELQKKQEEMLEM 321
                         79***************************************9998887666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-13267333IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.461269318IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.19E-11271320No hitNo description
Gene3DG3DSA:1.20.5.1708.4E-15271320No hitNo description
CDDcd147071.18E-27271325No hitNo description
PfamPF001701.3E-12271322IPR004827Basic-leucine zipper domain
PROSITE patternPS000360274289IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDLGDGGGAE RKGAPPPPLA RQGSVYSLTF DEFQSTLGGA SGGGGLGKDF GSMNMDELLR  60
SIWTAEEGQA MASASAAPAG ELQRQGSLTL PRTLSIKTVD EVWRDFVRDA PPGSAGGGEP  120
LPKRQPTLGE MTLEDFLVRA GVVRENPAAS AAVDAAVPPP LAARPIQVVN NGSMFFENFG  180
GANGASSASA MGFAPVGIGD PTMANGMMPG VAGMGVGVVT VSPLDTSAGQ LDSVGKVNGE  240
LSSPGGPVPY PFEGVIRGRR SGGHVEKVVE RRQRRMIKNR ESAARSRARK QAYTMELEAE  300
VQKLKEQNEE LQKKQEEMLE MQKNQALEVI NNPYGQKKRC LRRTLTGPW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00087SELEXTransfer from AT1G49720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G254200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8503230.0KJ850323.1 Brachypodium distachyon ABF2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304807.10.0bZIP transcription factor TRAB1
SwissprotQ6ZDF31e-151TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLI1I7U30.0I1I7U3_BRADI; ABF2
STRINGBRADI3G38200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49720.28e-33abscisic acid responsive element-binding factor 1
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]