PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G238600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26569.4 Da PI: 4.9193 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.8e-16 | 25 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I ++ +k+ +lg++ t eeAa a++ a+ + +g Brast03G238600.3.p 25 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYATQEEAAMAYDIAAIEHRG 76 89****99***********99654...4**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.8E-11 | 25 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.33E-25 | 25 | 86 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-18 | 25 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.78 | 26 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-18 | 26 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-26 | 26 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEGQSREEYI GSLRRKSTGF SRGVSKYRGV ARHHHNGKWE ARIGRVYGNK YLYLGTYATQ 60 EEAAMAYDIA AIEHRGLNAV TNFDVSRYIN WHRRLCHSDQ QLLLGDSITP ATNPTIDLEE 120 AMASDNQDQF LLPSQVTTPP STSSALGMLL QSPRLKEVIE GSGAASAMAA SSETSWSWSS 180 CSPSPSPPSP SPPAPQQRCS FPDDVQTYFG CEGGDGGAEV DTFLFGDLSA YAAPMFQFEQ 240 LDV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G238600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106769 | 9e-86 | AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence. | |||
GenBank | HQ858820 | 9e-86 | HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572236.1 | 1e-110 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 2e-54 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0Q3FJV1 | 1e-110 | A0A0Q3FJV1_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36820.1 | 1e-109 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.2 | 8e-54 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G238600.3.p |
Publications ? help Back to Top | |||
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