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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G238600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 282aa MW: 31225.5 Da PI: 4.7205 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.5e-16 | 63 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I ++ +k+ +lg++ t eeAa a++ a+ + +g Brast03G238600.2.p 63 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYATQEEAAMAYDIAAIEHRG 114 89****99***********99654...4**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.16E-24 | 63 | 124 | No hit | No description |
Pfam | PF00847 | 8.6E-11 | 63 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 63 | 124 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-18 | 64 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-26 | 64 | 128 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.78 | 64 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MDFFSTQEVW CWSSQEACAA RWRRLSERVS NYDEELKEME GQSREEYIGS LRRKSTGFSR 60 GVSKYRGVAR HHHNGKWEAR IGRVYGNKYL YLGTYATQEE AAMAYDIAAI EHRGLNAVTN 120 FDVSRYINWH RRLCHSDQQL LLGDSITPAT NPTIDLEEAM ASDNQDQFLL PSQVTTPPST 180 SSALGMLLQS PRLKEVIEGS GAASAMAASS ETSWSWSSCS PSPSPPSPSP PAPQQRCSFP 240 DDVQTYFGCE GGDGGAEVDT FLFGDLSAYA APMFQFEQLD V* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G238600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106769 | 3e-89 | AK106769.1 Oryza sativa Japonica Group cDNA clone:002-115-F07, full insert sequence. | |||
GenBank | HQ858820 | 3e-89 | HQ858820.1 Oryza sativa Japonica Group isolate UT1237 AP2-EREBP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572236.1 | 1e-115 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 9e-59 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | I1I7D4 | 1e-114 | I1I7D4_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36820.1 | 1e-115 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.2 | 4e-58 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G238600.2.p |
Publications ? help Back to Top | |||
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