PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G238600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 361aa MW: 40128.6 Da PI: 8.7668 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.7 | 1.6e-14 | 40 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d ++ + k+ ++++lg +g +e Aa+a++ a++k++g Brast03G238600.1.p 40 AYRGVTRHRWTGRFEAHLWDkNTWsQSqrkKKgRQVYLGAYGGEEAAARAYDLAALKYWG 99 69******************8888722565447*************************98 PP | |||||||
2 | AP2 | 50.5 | 5.2e-16 | 142 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +g+W+A+I ++ +k+ +lg++ t eeAa a++ a+ + +g Brast03G238600.1.p 142 SKYRGVARHHHNGKWEARIGRVYG---NKYLYLGTYATQEEAAMAYDIAAIEHRG 193 89****99***********99654...4**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.07E-16 | 39 | 109 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-12 | 40 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-15 | 40 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-26 | 40 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.336 | 40 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-6 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-6 | 89 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-22 | 142 | 203 | No hit | No description |
Pfam | PF00847 | 1.3E-10 | 142 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-17 | 142 | 203 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.78 | 143 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 143 | 202 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-26 | 143 | 207 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MAKQRTNRAD ADAATVQSTK PKRTRKSVPR RESPSRRTSA YRGVTRHRWT GRFEAHLWDK 60 NTWSQSQRKK KGRQVYLGAY GGEEAAARAY DLAALKYWGR DTVLNFPVSN YDEELKEMEG 120 QSREEYIGSL RRKSTGFSRG VSKYRGVARH HHNGKWEARI GRVYGNKYLY LGTYATQEEA 180 AMAYDIAAIE HRGLNAVTNF DVSRYINWHR RLCHSDQQLL LGDSITPATN PTIDLEEAMA 240 SDNQDQFLLP SQVTTPPSTS SALGMLLQSP RLKEVIEGSG AASAMAASSE TSWSWSSCSP 300 SPSPPSPSPP APQQRCSFPD DVQTYFGCEG GDGGAEVDTF LFGDLSAYAA PMFQFEQLDV 360 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G238600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003572236.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 1e-102 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2K2D1L2 | 0.0 | A0A2K2D1L2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36820.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-96 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G238600.1.p |
Publications ? help Back to Top | |||
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