PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast03G237200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 36123.3 Da PI: 5.5826 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.3 | 4.7e-47 | 10 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekew.yfFskrdkkyatgkrknratksgy 82 lppGfrF Ptdeelv++yL++k+ + +++ +i++vd+yk+ePwdLp+ + a + +e+ yfF+kr+ +y++g r++r+t+ gy Brast03G237200.1.p 10 LPPGFRFFPTDEELVTFYLANKAMDASFTS-AAIRDVDLYKSEPWDLPStgkaamT--AgsGGDECyYFFCKRSIRYPSGARARRSTAGGY 97 79*************************999.78**************954666542..2334445549*********************** PP NAM 83 Wkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wk+tgkdk+v+++ +g+lvg+kktLvf++grap+gekt+Wvmhey l Brast03G237200.1.p 98 WKSTGKDKAVHCSreSGRLVGTKKTLVFHRGRAPRGEKTSWVMHEYML 145 ***********98777888***************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-55 | 6 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.777 | 10 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-25 | 11 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MEGEWQMECL PPGFRFFPTD EELVTFYLAN KAMDASFTSA AIRDVDLYKS EPWDLPSTGK 60 AAMTAGSGGD ECYYFFCKRS IRYPSGARAR RSTAGGYWKS TGKDKAVHCS RESGRLVGTK 120 KTLVFHRGRA PRGEKTSWVM HEYMLLGQRC SNACSRADQG KWVICRVFMK KPPSDHRTLE 180 RDLEQGETLH GQTSPGHLLP MDGCDGEEAA PQAASQVLSD DPWDTNKRAM NSHENDGLVH 240 HVHPSLMMDR PSCASPFWPL YDDDQLGSFT SATDDLPELL EYGGYDIPKR GASPGNELAS 300 SSEAEISSIS VVPLHLDESY WNFGS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-42 | 10 | 171 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-42 | 10 | 171 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-42 | 10 | 171 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-42 | 10 | 171 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-42 | 10 | 171 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-42 | 10 | 171 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-42 | 10 | 171 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-42 | 10 | 171 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-42 | 10 | 171 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-42 | 10 | 171 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-42 | 10 | 171 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-42 | 10 | 171 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-42 | 10 | 171 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-42 | 10 | 171 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast03G237200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316300.1 | 0.0 | NAC domain-containing protein 46 | ||||
TrEMBL | A0A0Q3FGW2 | 0.0 | A0A0Q3FGW2_BRADI; Uncharacterized protein | ||||
TrEMBL | A0A2K2D1I9 | 0.0 | A0A2K2D1I9_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G36670.1 | 1e-171 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14765 | 21 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04060.1 | 8e-59 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast03G237200.1.p |