PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G210700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 888aa    MW: 95505.4 Da    PI: 6.1231
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G210700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20125180156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Brast03G210700.1.p 125 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 180
                         688999***********************************************998 PP
2START117.81.5e-3742260543206
                         SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..T CS
               START  43 dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lg 119
                          ++e  r+ +vv+m++ +lv  +ld   +W e ++    ka t++vi +g        g l lm+ae q+lsplvp R++vf Ry+     
  Brast03G210700.1.p 422 LRTEGTRDGAVVIMNSITLVDAFLDAH-KWMELFPsivsKARTIQVIHNGaasghlgsGSLILMQAEVQFLSPLVPaREVVFFRYCVHnAD 511
                         5788889999*****************.*******9**9*************************************************999 PP

                         TS-EEEEEE.....EEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXX CS
               START 120 agdwvivdv.....SvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrq 203
                         +g+w ivd       +d  q+++++s vvR++++pSg++i++ +ng+s+v+wveh+++ g     + +++  v  g+a+ga +wva lqrq
  Brast03G210700.1.p 512 EGSWSIVDFpadgfQDDLLQQQQQTSAVVRCRRRPSGCIIQDAPNGYSRVVWVEHMEVVGDEKplQPVFKDHVAGGAAFGATRWVAVLQRQ 602
                         9******972222245566666669********************************98865448************************** PP

                         XXX CS
               START 204 cek 206
                         ce+
  Brast03G210700.1.p 603 CER 605
                         *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.19E-20112183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-21113176IPR009057Homeodomain-like
PROSITE profilePS5007117.216122182IPR001356Homeobox domain
SMARTSM003892.1E-19123186IPR001356Homeobox domain
CDDcd000867.06E-19125183No hitNo description
PfamPF000463.7E-18125180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PROSITE profilePS5084841.021349608IPR002913START domain
CDDcd088753.06E-93353604No hitNo description
SMARTSM002344.1E-19379605IPR002913START domain
PfamPF018521.1E-30422605IPR002913START domain
SuperFamilySSF559619.34E-25427607No hitNo description
SuperFamilySSF559611.0E-16633866No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MFGDCQVLSS MAAMAGGSSS ADALFASPLM QPNPGGFNMG MAPFHHHHFS TTLIPKEEGV  60
MGMGKDDDLD LAEMDMAELS GGSGSAHLDG LLAFDDDDHK PHHNETNMAS TAAANNSNAG  120
NGSKKKRYHR HTAHQIQQME ALFKECPHPD DKQRLKLSQE LGLKPRQVKF WFQNRRTQMK  180
AQQDRADNVI LRAENESLKT DNFRLQAALR NVVCPTCGHP GAVLADVPYE EQTLRVENAR  240
LKDELDRLAS IATRFGGGRQ QQQPGGGMSS LLGCMSAMSA PMLMPPPPQL DLDMSAYSRH  300
HFADHQQHGG GAMADHHHLM ASSVPQLQQM TGHGGVSAEG SYMAPAVVQE QDRQLVLDLA  360
ATAAEHLARM CRTGDPLWAR RVAGASGEVM DAAEHARVFS WPVVDAGKQQ QDDLAAASSA  420
ALRTEGTRDG AVVIMNSITL VDAFLDAHKW MELFPSIVSK ARTIQVIHNG AASGHLGSGS  480
LILMQAEVQF LSPLVPAREV VFFRYCVHNA DEGSWSIVDF PADGFQDDLL QQQQQTSAVV  540
RCRRRPSGCI IQDAPNGYSR VVWVEHMEVV GDEKPLQPVF KDHVAGGAAF GATRWVAVLQ  600
RQCERLASEL ARSIADQGVI RTPEARTNMM RLSQRMITAF CANISASGSQ SWTALSDSTE  660
DTIRVTTRKN TEPGQPSGVI LTAVSTSWLP FSHQQVFELL ADEQQRCQLE IMSNGGSLQE  720
VAHIANGSHP RNCISLLRIN AASNSSQNVE LLLQETSTHP DGGSLVVFAT VDVDAIQVTM  780
SGEDPSYIPL LPLGFAIFPA TNPSPSATRA NPGDGENTPG NTDEPANGCL LTVGMQVLAS  840
AVPSAKLNLS SVTAINSHIC NTIHHITTAL KGAGASRSEP VSAGSDQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G210700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731770.0AK373177.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3023B13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235052.10.0homeobox-leucine zipper protein ROC3
RefseqXP_024318297.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLI1I6I00.0I1I6I0_BRADI; Uncharacterized protein
STRINGBRADI3G34410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.11e-174homeobox-7