PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast03G207400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 190aa MW: 20853.7 Da PI: 9.7115 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.8 | 1.1e-10 | 55 | 80 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC f G+C yGdrC+FaHg Brast03G207400.1.p 55 YKTKLCEKFKTDGHCMYGDRCTFAHG 80 9************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-17 | 48 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-10 | 53 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.535 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.9E-5 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MERENHPLDM TPEHVLGQSG GRPLRLPPPS QQPSEGVMPA GSQERLGQPP TKIYYKTKLC 60 EKFKTDGHCM YGDRCTFAHG SAELRRPSLA AHSAFELGGS MCYNLKNKGT FPRGFAQGPT 120 IRNPGEMRSE IPPARAAPGR AFPPVPSPLM RDLPRKMPEE QEGGAKVSNL ERLSRKKTSG 180 IYGDWPEQS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast03G207400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024317904.1 | 2e-87 | zinc finger CCCH domain-containing protein 1-like | ||||
TrEMBL | A0A0Q3HWU3 | 4e-86 | A0A0Q3HWU3_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 5e-10 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast03G207400.1.p |