PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G193000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 647aa    MW: 67466.5 Da    PI: 5.9891
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G193000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.33.5e-872726452374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.d..pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                         ve+L e+A+  ++gd + a+++Larl+ +  a+p++ +  p+ R a+yf+eAL+  l+    e y + +p ++++++++ +l a+k+fse+
  Brast03G193000.1.p 272 VEQLAEAAKLAEAGDSHGAREILARLNYRlpAAPAAgNtpPLLRSAFYFKEALRVALSAPAGEAYYSPSPPASTPYDVVLKLGAYKAFSEA 362
                         789************************999966655235689*****************8888888888888889**************** PP

                GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                         sP+l f+hlt+ qa+l+++    +vH++Dfdi++G QW++L+q+La sR+  + ++ lR+T+++sp++++  el+ ++e+L++fA+ lgv 
  Brast03G193000.1.p 363 SPVLPFAHLTCVQAVLDELGDRGCVHVLDFDIGMGEQWASLMQELAsSRRrtSAAAALRVTALVSPATHHPLELQLIHENLSSFAADLGVL 453
                         **********************************************7555558888*********************************** PP

                GRAS 176 fefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                         f+f ++ +++l+  +l ++     +EalaV+l +   +           ++++L+lvk+l +kvvv v++  d+ + +F+ ++++a++  +
  Brast03G193000.1.p 454 FQFAAFNVETLDPADLVSIVAGAgDEALAVHLPVGAAHAA--------STPAILRLVKRLGAKVVVAVDRGGDRAELPFAGHLFQAFQSAV 536
                         *****9777777777777766668**********999997........4678*************************************** PP

                GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee. 354
                          l++s++a l+ ++ +++  +Er+l++++++++v +++++r      ++ Wr+ + +aGF p++ s++a++qa++ll+kv+++g+rve + 
  Brast03G193000.1.p 537 FLLESMDAVLGGADpDTAGRIERFLVQPAVEQCVVARHRDR--ASPGMMPWRAVFAAAGFAPAQASTFAESQAESLLHKVPVRGFRVERRa 625
                         **********999989999******************9995..45679****************************************774 PP

                GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          gsl+l+W++ +LvsvSaWr
  Brast03G193000.1.p 626 PGSLCLYWQRAELVSVSAWR 645
                         79999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.397245624IPR005202Transcription factor GRAS
PfamPF035141.2E-84272645IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MRGMPFAGES HAGIQLLLQQ QQQGVLAGGG KVSGGFWEPT SVLDLRHSPS PSPPVSSAST  60
LSSSEVAALA GGDAKNVSPP PQAWPPGGAG GEDAAGVKEE WAHQLAPLDD MGLAPGDEWD  120
DAAAPPSGPD SSFLRWIIAG GEDGVLMDPP VLELDHATSM MSSPAAAAFG PNLPSSFAPA  180
MEDTKPQQAF GHGPSFLLHH PQPHAAFFGS HPPSFDSPAA TKRHHPMAAA PPPKLPPYPS  240
HHLAPASGGG FVLKQPKAAA ASQDEAAAMA AVEQLAEAAK LAEAGDSHGA REILARLNYR  300
LPAAPAAGNT PPLLRSAFYF KEALRVALSA PAGEAYYSPS PPASTPYDVV LKLGAYKAFS  360
EASPVLPFAH LTCVQAVLDE LGDRGCVHVL DFDIGMGEQW ASLMQELASS RRRTSAAAAL  420
RVTALVSPAT HHPLELQLIH ENLSSFAADL GVLFQFAAFN VETLDPADLV SIVAGAGDEA  480
LAVHLPVGAA HAASTPAILR LVKRLGAKVV VAVDRGGDRA ELPFAGHLFQ AFQSAVFLLE  540
SMDAVLGGAD PDTAGRIERF LVQPAVEQCV VARHRDRASP GMMPWRAVFA AAGFAPAQAS  600
TFAESQAESL LHKVPVRGFR VERRAPGSLC LYWQRAELVS VSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2530364532375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G193000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234984.10.0scarecrow-like protein 6
TrEMBLA0A0Q3LZR90.0A0A0Q3LZR9_BRADI; Uncharacterized protein
STRINGBRADI3G32890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-65GRAS family protein