PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G178500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 192aa    MW: 20615 Da    PI: 5.6261
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G178500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-161564155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr +   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g
  Brast03G178500.1.p 15 PVYRGVRLR--AGKWVSEIRElR-----KpNRIWLGTYPTPEMAAAAYDAAALALRG 64
                        68****975..6*********55.....579************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-111564IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-181673IPR016177DNA-binding domain
SMARTSM003806.4E-231678IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-251673IPR001471AP2/ERF domain
PROSITE profilePS5103218.7691672IPR001471AP2/ERF domain
CDDcd000184.39E-131774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSLCGRRARA ETRHPVYRGV RLRAGKWVSE IRELRKPNRI WLGTYPTPEM AAAAYDAAAL  60
ALRGSGTALN FPDAARTRPA PRSVSADDVR AAAAEAAASF GAVATSAWTT TQRSNDDQCY  120
HQRHGDHQLR GGDVMGVVDE DDVFEMPRLM ASMAEGLMIS PPDGGAVAPY YDALQVEDEG  180
DAAAVSLWDH S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12172172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G178500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236639.13e-91ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-38ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLI1I5J57e-90I1I5J5_BRADI; Uncharacterized protein
STRINGBRADI3G31600.11e-90(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-24ERF family protein