PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G169600.4.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 653aa MW: 70330.1 Da PI: 6.5261

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G169600.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.7	3.5e-14	4	54	35	87
trihelix 35 skkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 ++k++e+g++r++k+Ckek+en++k+yk++k+++ +r ++ +t+++f+qlea Brast03G169600.4.p 4 GRKLAEEGYRRNAKKCKEKFENVHKYYKRTKDSRAGR--NDGKTYRFFQQLEA 54 57899****************************97..56668*****85 PP
2	trihelix	109.9	1.5e-34	337	422	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea Brast03G169600.4.p 337 RWPKAEVHALIQLRSNLDTRYQEAGPKGPLWEEISAGMRRMGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 422 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-9	5	55	No hit	No description
PROSITE profile	PS50090	7.41	330	394	IPR017877	Myb-like domain
SMART	SM00717	0.0053	334	396	IPR001005	SANT/Myb domain
Pfam	PF13837	2.5E-23	336	423	No hit	No description
CDD	cd12203	1.89E-28	336	401	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.1E-4	336	393	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010192	Biological Process	mucilage biosynthetic process
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MVAGRKLAEE GYRRNAKKCK EKFENVHKYY KRTKDSRAGR NDGKTYRFFQ QLEALQGAPG 60 AGAGASSVPP PAAAVRAPAE PPPQQPVVAT GAMPMGVGNL SFSTSNTEEF SEEEEEEEDS 120 DDEGTDDMAV GGKRKRLSSD GGASGGKNSK KMMRFFEGLM RQVMERQEAM QQRFLEAIEK 180 REQDRMIREE AWRRQEMARL AREQEILAQE RAMAASRDAA VLGFIQKITG QPVPMPMPPM 240 APPPSVAFMP PSSHPAPISF SAAPPSSQPP SQSPRPQKPP MPLATPAPQK TPPVPATPPP 300 PPPQQQQQQQ GSGGMEMVAV AAGELQAHDG GSASSSRWPK AEVHALIQLR SNLDTRYQEA 360 GPKGPLWEEI SAGMRRMGYS RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL 420 EALYRNKQAA AAPLPLAAPP PPPPELTVAA PISQTPPPHA SQQQQPAAKN GAGNGHGNGN 480 GSGVAGSEGG GVSAGAVQMQ ASNGFFGEAG AVAGKKPEAM MKETIVLEQQ QRQQPQAAPI 540 SSSYNNRAGV DSDNSMDDED DYDDEDEDDD DEDDVDGNKM QYEIQFQSQQ QQQQQQHHQL 600 HQQHHQHNNH NVVRPNAGAA GGGNQPGGAA PPSAASAAAA TTTAGSFLGM VQ*

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MVAGRKLAEE GYRRNAKKCK EKFENVHKYY KRTKDSRAGR NDGKTYRFFQ QLEALQGAPG  60
AGAGASSVPP PAAAVRAPAE PPPQQPVVAT GAMPMGVGNL SFSTSNTEEF SEEEEEEEDS  120
DDEGTDDMAV GGKRKRLSSD GGASGGKNSK KMMRFFEGLM RQVMERQEAM QQRFLEAIEK  180
REQDRMIREE AWRRQEMARL AREQEILAQE RAMAASRDAA VLGFIQKITG QPVPMPMPPM  240
APPPSVAFMP PSSHPAPISF SAAPPSSQPP SQSPRPQKPP MPLATPAPQK TPPVPATPPP  300
PPPQQQQQQQ GSGGMEMVAV AAGELQAHDG GSASSSRWPK AEVHALIQLR SNLDTRYQEA  360
GPKGPLWEEI SAGMRRMGYS RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL  420
EALYRNKQAA AAPLPLAAPP PPPPELTVAA PISQTPPPHA SQQQQPAAKN GAGNGHGNGN  480
GSGVAGSEGG GVSAGAVQMQ ASNGFFGEAG AVAGKKPEAM MKETIVLEQQ QRQQPQAAPI  540
SSSYNNRAGV DSDNSMDDED DYDDEDEDDD DEDDVDGNKM QYEIQFQSQQ QQQQQQHHQL  600
HQQHHQHNNH NVVRPNAGAA GGGNQPGGAA PPSAASAAAA TTTAGSFLGM VQ*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00243	DAP	Transfer from AT1G76880	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G169600.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC025296	1e-121	AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBank	AP014966	1e-121	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	1e-121	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBank	CT830545	1e-121	CT830545.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574172.1	0.0	trihelix transcription factor GTL1 isoform X1
Refseq	XP_010234894.1	0.0	trihelix transcription factor GTL1 isoform X1
TrEMBL	A0A2K2D079	0.0	A0A2K2D079_BRADI; Uncharacterized protein
STRING	BRADI3G30457.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	9e-53	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Brast03G169600.4.p