PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G163000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 267aa MW: 27001.1 Da PI: 9.5079

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G163000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	100.4	1.2e-31	74	130	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++cprC s ntkfCyynnys +qPry+C+aCrr+Wt+GG+lr+vPvGggr+ +++s Brast03G163000.1.p 74 PRDCPRCRSGNTKFCYYNNYSRKQPRYLCRACRRHWTEGGTLRDVPVGGGRKSRRRS 130 578***********************************************8877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.4E-29	75	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.947	75	129	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	77	113	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-16	82	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MASPFLAGSS SSSASSPLSY MIPRPPPPPS SLAQGQEGFL SCGVLAQQGP QGEAVGVGVG 60 VRAARHAGMP RPPPRDCPRC RSGNTKFCYY NNYSRKQPRY LCRACRRHWT EGGTLRDVPV 120 GGGRKSRRRS SGAGSRKASA GAKAASASPS SNDAAAASRS AAAAAAAGVD ASLVPADVLR 180 QMLFFQPAGL EGGYGIDMGA WQQQMAAAAA APNATKAPQE GGYDGDVGAG VGGTAAADGV 240 NCGAGVQFWS GGWQMQDDMP GFDGAF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G163000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084361	3e-70	AM084361.1 Hordeum vulgare subsp. vulgare dof13 gene for dof zinc finger protein 13.
GenBank	EU967243	3e-70	EU967243.1 Zea mays clone 300623 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003571940.1	1e-84	dof zinc finger protein 1
TrEMBL	I1I532	3e-83	I1I532_BRADI; Uncharacterized protein
STRING	BRADI3G29940.1	5e-84	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	3e-17	Dof family protein

Link Out ? help Back to Top
Phytozome	Brast03G163000.1.p