PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G152300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92364.2 Da    PI: 5.3997
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G152300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-183189357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++p+ ++r++L +++    +++ rq+kvWFqNrR ++k+
  Brast03G152300.1.p 31 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEARQIKVWFQNRRCRDKQ 89
                        5678****************************************************996 PP
2START162.72.8e-511693762204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+  ++  g  g+
  Brast03G152300.1.p 169 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTQLPAGngGT 258
                         7899******************************************************9999999999.****************9999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++++a+++lvp Rdf+++Ry+ + ++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl+++++
  Brast03G152300.1.p 259 IELVYMQMYAPTTLVPaRDFWTLRYTTTTEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLDLEAWSV 349
                         ******************************************9999998888899************************************ PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s+++ ++k+++a+l++ +
  Brast03G152300.1.p 350 PEVLRPLYESSRVVAQKMTTAALRHIR 376
                         ***********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-191089IPR009057Homeodomain-like
PROSITE profilePS5007115.5162690IPR001356Homeobox domain
SMARTSM003892.3E-152894IPR001356Homeobox domain
SuperFamilySSF466894.11E-163092IPR009057Homeodomain-like
CDDcd000866.97E-163191No hitNo description
PfamPF000464.1E-163289IPR001356Homeobox domain
CDDcd146861.00E-583122No hitNo description
PROSITE profilePS5084827.348159387IPR002913START domain
CDDcd088753.57E-72163379No hitNo description
SMARTSM002349.4E-40168378IPR002913START domain
Gene3DG3DSA:3.30.530.206.5E-22168354IPR023393START-like domain
PfamPF018522.9E-49169376IPR002913START domain
SuperFamilySSF559618.79E-37169380No hitNo description
PfamPF086701.8E-48698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MAAAVAMRSG SGSGSDGGGG GYDKGGMDSG KYVRYTPEQV EALERVYAEC PKPTSTRRQQ  60
LLRECPILSN IEARQIKVWF QNRRCRDKQR KESSRLQAVN RKLSAMNKLL MEENERLQKQ  120
VSQLVHENAY MKQQLQNPSL ANDTSCESNV TTPQNPLRDA SNPAGLLTIA EETLTEFLSK  180
ATGTAVDWVP MPGMKPGPDS FGIVAISHGC RGVAARACGL VNLEPTKIVE ILKDRPSWFR  240
DCRSLEVFTQ LPAGNGGTIE LVYMQMYAPT TLVPARDFWT LRYTTTTEDG SLVVCERSLS  300
GSGGGPSTAS AQQFVRAEML PSGYLVRPCD GGGSIVHIVD HLDLEAWSVP EVLRPLYESS  360
RVVAQKMTTA ALRHIRQIAQ ETSGEVVYAL GRQPAVLRTF SQRLSRGFND AISGFNDDGW  420
SVMGGDGIED VIIACNSKKI RSNNAAPSAF ESPGGVICAK ASMLLQSVPP AVLVRFLREH  480
RSEWADYNFD AYSASALKTS SCSLPGLRPM RFSGSQIIMP LAHTVENEEI LEVVRLEGQA  540
LDEGLLSRDI HLLQFCTGID EKSMGSCFQL VFAPIDELFP DDAPLISSGF RVIPLDMKTD  600
GTPTGRTLDL ASSLEVGSTT LQAPGNTSLD DSNLRSVLTI AFQFPYEMHL QDTVATMARQ  660
YVRSIVSAVQ RVSMAISPSR SGLNAEQKII SGFPEAATLA RWICQSYQFH LGVELVRQAD  720
EAGESLLRML WDYEDAILCC SFKEKPVFTF ANEMGINMLE TSFVALQDLS LDKIFDEAGR  780
KALYSEIPKL MEQGYVYLPA GVCLSGMGRH VSFEQAIAWK VLGEDNNVHC LAFCFVNWSF  840
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G152300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620090.0AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574071.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLI1I4S10.0I1I4S1_BRADI; Uncharacterized protein
STRINGBRADI3G28970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein