PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G121200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 423aa MW: 44999.7 Da PI: 8.6582

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G121200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	74	132	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrknk+ Brast03G121200.1.p 74 PDKILPCPRCNSMDTKFCYFNNYNINQPRHFCKKCQRYWTAGGAMRNVPVGAGRRKNKN 132 7899*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	70	131	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	76	132	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	78	132	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	80	116	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MAECRGGDGL IKLFGKTIPV LEPVGALSKD LGHSGSSSTE SGVQEITTDP SPQPEVVDAE 60 DPAVASEKEK LKKPDKILPC PRCNSMDTKF CYFNNYNINQ PRHFCKKCQR YWTAGGAMRN 120 VPVGAGRRKN KNVLAASNFL QRVRAALPGD TFCSSPCPPV KTNGTVLSFG HDASSTLDLA 180 EHLKDNRMPI ARPGNARDNP STGSCSEVVS SNRNDKDQRN NITVEKSANG VQQQHPAGMN 240 GGTMWPYGCA PSAAYYTSGI AIPIYPGAPG PGYWGCMVPG AWSLPWPVQC QPQALSSPTS 300 APSVSSAPSP LTLGKHPRDQ ADEGNGGHGN GNGKVWVPKT IRIDNADEVA RSSIRSLFGI 360 KGDDRDEQIT GTSGKKLATS VFEPKQHEGK MVKHAAAITS LPLLHHANPV ALTRSVIFHE 420 GS*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MAECRGGDGL IKLFGKTIPV LEPVGALSKD LGHSGSSSTE SGVQEITTDP SPQPEVVDAE  60
DPAVASEKEK LKKPDKILPC PRCNSMDTKF CYFNNYNINQ PRHFCKKCQR YWTAGGAMRN  120
VPVGAGRRKN KNVLAASNFL QRVRAALPGD TFCSSPCPPV KTNGTVLSFG HDASSTLDLA  180
EHLKDNRMPI ARPGNARDNP STGSCSEVVS SNRNDKDQRN NITVEKSANG VQQQHPAGMN  240
GGTMWPYGCA PSAAYYTSGI AIPIYPGAPG PGYWGCMVPG AWSLPWPVQC QPQALSSPTS  300
APSVSSAPSP LTLGKHPRDQ ADEGNGGHGN GNGKVWVPKT IRIDNADEVA RSSIRSLFGI  360
KGDDRDEQIT GTSGKKLATS VFEPKQHEGK MVKHAAAITS LPLLHHANPV ALTRSVIFHE  420
GS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G121200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX428459	9e-72	JX428459.1 Zea mays subsp. mays clone pUT3054 DOF40 C2C2-DOF type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573898.1	0.0	cyclic dof factor 1
TrEMBL	I1I3V1	0.0	I1I3V1_BRADI; Uncharacterized protein
STRING	BRADI3G25670.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	8e-51	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Brast03G121200.1.p