PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G119400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 344aa MW: 38295.7 Da PI: 9.8679

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G119400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.9	5.2e-16	26	107	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GF +++s+++ +r +C++eg+ + + + +++ r+++++gCka++ vk++ dg v++++ eHnH+l+ Brast03G119400.1.p 26 EFYNAYAKHTGFGLKRSQHNAY-------RRYIRCTREGRYTASVLD-GESQCGRESKKVGCKAHMSVKMNGDGACIVKNIHFEHNHQLS 107 6************9987765.......8889******9999.99999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-12	26	107	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-6	229	266	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MQAPELPTNL IPVVGQHFGT FDKAFEFYNA YAKHTGFGLK RSQHNAYRRY IRCTREGRYT 60 ASVLDGESQC GRESKKVGCK AHMSVKMNGD GACIVKNIHF EHNHQLSLSP SMLVFLHSRK 120 RVNPTLQYYI RDLQLSNVKY VNIMSLLTRM SGGRRKLGCH NKDVLNMKAK HTRMESQDAV 180 QKLFKFFGDM TAENKNFYYD VHVDEENRLK NIFWANASCR ASYADFGDCI TFDTTYKSNK 240 YHLPLAVFVS ASNHLLSTIF GVALMEGGGS CVPPEVSRAV VAGSLASAYA AARSPAQGEE 300 GGSARRGGRR EKFSAAQRLS VLEVSAWFVM SNAVARHSAA VCF*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MQAPELPTNL IPVVGQHFGT FDKAFEFYNA YAKHTGFGLK RSQHNAYRRY IRCTREGRYT  60
ASVLDGESQC GRESKKVGCK AHMSVKMNGD GACIVKNIHF EHNHQLSLSP SMLVFLHSRK  120
RVNPTLQYYI RDLQLSNVKY VNIMSLLTRM SGGRRKLGCH NKDVLNMKAK HTRMESQDAV  180
QKLFKFFGDM TAENKNFYYD VHVDEENRLK NIFWANASCR ASYADFGDCI TFDTTYKSNK  240
YHLPLAVFVS ASNHLLSTIF GVALMEGGGS CVPPEVSRAV VAGSLASAYA AARSPAQGEE  300
GGSARRGGRR EKFSAAQRLS VLEVSAWFVM SNAVARHSAA VCF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G119400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313434.1	1e-108	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K2DQ08	1e-146	A0A2K2DQ08_BRADI; Uncharacterized protein
STRING	BRADI1G47460.1	1e-123	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-37	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast03G119400.1.p