PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G117800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 553aa MW: 63922.7 Da PI: 8.474

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G117800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.7	1.4e-16	26	107	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GF +++s++++ +r +C++eg+ +++ + +++r ra++++gCka++ v+++ dg v++++ eHnH+l+ Brast03G117800.1.p 26 EFYNAYAKHTGFGLKRSQHNEY-------RRYIRCTREGRYTTSVLD-GERQRGRASKKVGCKAHMSVQMNGDGACIVKNIHFEHNHQLS 107 6*************998876.......7889******9999.99999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-13	26	107	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-19	187	270	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MEAPELPTNL IPIIGQHFGT FDEAFEFYNA YAKHTGFGLK RSQHNEYRRY IRCTREGRYT 60 TSVLDGERQR GRASKKVGCK AHMSVQMNGD GACIVKNIHF EHNHQLSLSP SMLVFLHLHK 120 RVNPNLQDYI RDLQLSNVKH VNIMSLLTRM SGGRGKLGCH NKDVLNMYVC FLHPTCCRAS 180 YADFGDCITF DTTYKSNKYH LPLAVFVGAS NHLLSTIFGV ALLGDESVDS FKWVFSTFLK 240 CMHQCPSMAK AISQIFPRSL HKLCRWHVTR KHKDQLAKLY KLLPDLKEQL AAVLNHPLMP 300 SEFEAAWHDL VNKYNLHDVN VRVKLWNERK TWVSAYWKEF FWGYEAVNAI RLQGGDNRAL 360 HQGRSRDFAW SRHEFRVLAD EAEGKFECEC KMWEHTDEIP RQYILKRYTK DAVTDPVFNR 420 RDYKMMAQDG TSLEYRRTML FYEAMKTVNR GMASDRMFDI AMRALKEVNS RMDEEGSETN 480 AEADRQTEED HPERLAASDE IPGTNCHCKC PSRTRTGRQW KSQRPEAVQQ LQHDSGAQCK 540 DMQKEADGET AP*

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MEAPELPTNL IPIIGQHFGT FDEAFEFYNA YAKHTGFGLK RSQHNEYRRY IRCTREGRYT  60
TSVLDGERQR GRASKKVGCK AHMSVQMNGD GACIVKNIHF EHNHQLSLSP SMLVFLHLHK  120
RVNPNLQDYI RDLQLSNVKH VNIMSLLTRM SGGRGKLGCH NKDVLNMYVC FLHPTCCRAS  180
YADFGDCITF DTTYKSNKYH LPLAVFVGAS NHLLSTIFGV ALLGDESVDS FKWVFSTFLK  240
CMHQCPSMAK AISQIFPRSL HKLCRWHVTR KHKDQLAKLY KLLPDLKEQL AAVLNHPLMP  300
SEFEAAWHDL VNKYNLHDVN VRVKLWNERK TWVSAYWKEF FWGYEAVNAI RLQGGDNRAL  360
HQGRSRDFAW SRHEFRVLAD EAEGKFECEC KMWEHTDEIP RQYILKRYTK DAVTDPVFNR  420
RDYKMMAQDG TSLEYRRTML FYEAMKTVNR GMASDRMFDI AMRALKEVNS RMDEEGSETN  480
AEADRQTEED HPERLAASDE IPGTNCHCKC PSRTRTGRQW KSQRPEAVQQ LQHDSGAQCK  540
DMQKEADGET AP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G117800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K2CMU2	0.0	A0A2K2CMU2_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16401	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-42	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast03G117800.1.p