PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G094900.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 241aa    MW: 26264.8 Da    PI: 8.0042
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G094900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-1898152256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq   Le+ F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Brast03G094900.2.p  98 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAVLARQLNLRPRQVEVWFQNRRARTK 152
                         78889************************************************98 PP
2HD-ZIP_I/II125.91.8e-4098186190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+keq++lLE+ F+e+++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e ++Lr +
  Brast03G094900.2.p  98 RKKLRLTKEQSALLEDRFKEHSTLNPKQKAVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCETLTEENRRLHRELNSLR-A 186
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-1981155IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-1789153IPR009057Homeodomain-like
PROSITE profilePS5007117.39494154IPR001356Homeobox domain
SMARTSM003892.5E-1596158IPR001356Homeobox domain
CDDcd000864.46E-1598155No hitNo description
PfamPF000462.1E-1598152IPR001356Homeobox domain
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
SMARTSM003401.0E-19154197IPR003106Leucine zipper, homeobox-associated
PfamPF021834.0E-11154186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLMMAQEEVA GLALGLSLGS AGHHPLQQKE ASAAPQQYCA LPSLTLSLQA GAFVKKEAAE  60
EEEEEDERAL LYYSAASSAA DDDVADREAA GCNNSSSRKK LRLTKEQSAL LEDRFKEHST  120
LNPKQKAVLA RQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EVLKRCCETL TEENRRLHRE  180
LNSLRAIHHS SFFVPAAATL SVCPSCDRLA TAAAGAPPAS VVADRPAAKR SFFATKSAAC  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102SRKKLRL
2146154RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G094900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989841e-104FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571682.11e-127homeobox-leucine zipper protein HOX15
SwissprotQ7G7371e-69HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLI1I3341e-126I1I334_BRADI; Uncharacterized protein
STRINGBRADI3G21480.11e-127(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-56HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]