PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast03G093300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

BBR-BPC

Protein Properties

Length: 333aa MW: 36563.8 Da PI: 10.4342

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G093300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	360.3	3.9e-110	1	332	1	301
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki................rernlalsekkaavaerd................ 57 mdddgs rn+g+++p ++nlglqlmss++ +rd+k+ + +++ +++ Brast03G093300.1.p 1 MDDDGSLGmRNWGFFDPP--TRNNLGLQLMSSMPaDRDTKQllssgpfvhqhhhvhpHAPQHTQHHP-------Hphphprdgrggissga 82 9***999***99..7899*****99**99999998644333332222222222.......13445555***** PP GAGA_bind 58 ........maflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqlsepqledsavelreeekleal 135 ++f++++++++ +++ r+ k+l+ +++ ++ +++p+g+++++gt+ +++lq++++ e+++ + ++ e+++ + Brast03G093300.1.p 83 psdstympINFVRNEAWMQP---THHSREPKILHAITAGHTGHvvhaaHHEPAGYGIIPGTHGMHTLQMIQKA--EPQPPPPPKDECISPP 168 **999*******...9999****99999877789999****************6554..5555556699** PP GAGA_bind 136 pieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWG 226 +ee+a ++++ + +kk+q+ ++pk++k kk+kk + ++ ++ +++ a +r++ +kk++++v+ng++lD s++P+PvC+CtGa++qCY+WG Brast03G093300.1.p 169 LVEENAGVVNDLPPPKKKQQRRQPKSPKPKKPKKAP-APCEDGAPKPA-PRKRGPKKHVGMVINGIDLDLSRIPTPVCTCTGAQQQCYRWG 257 ******************************55.55555555553.89************************************ PP GAGA_bind 227 nGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir Brast03G093300.1.p 258 AGGWQSACCTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 332 ************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.0E-189	1	332	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.6E-118	1	332	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDDDGSLGMR NWGFFDPPTR NNLGLQLMSS MPADRDTKQL LSSGPFVHQH HHVHPHAPQH 60 TQHHPHPHPH PRDGRGGISS GAPSDSTYMP INFVRNEAWM QPTHHSREPK ILHAITAGHT 120 GHVVHAAHHE PAGYGIIPGT HGMHTLQMIQ KAEPQPPPPP KDECISPPLV EENAGVVNDL 180 PPPKKKQQRR QPKSPKPKKP KKAPAPCEDG APKPAPRKRG PKKHVGMVIN GIDLDLSRIP 240 TPVCTCTGAQ QQCYRWGAGG WQSACCTTTI STYPLPMSTK RRGARIAGRK MSHGAFKKVL 300 EKLAGEGYNL NNPIDLKTFW AKHGTNKFVT IR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G093300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573749.1	0.0	barley B recombinant-like protein A
Swissprot	P0DH88	1e-136	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	1e-136	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	A0A0Q3FA07	0.0	A0A0Q3FA07_BRADI; Uncharacterized protein
STRING	BRADI3G21390.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2211	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	5e-59	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Brast03G093300.1.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]