PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Brast03G042700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

SRS

Protein Properties

Length: 371aa MW: 40793.9 Da PI: 8.094

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast03G042700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	22.5	3.1e-07	57	91	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C +CGn a+ C ++ C+ CC C+ hv Brast03G042700.1.p 57 KPKCIQCGNVARSRCPFQCCKSCCYKAQNPCHIHV 91 568*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-4	59	91	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MAASSPASSG KAASDTSTPA PAPTPAPAVA NGNGTPQKPP PGTGFDMPKP NLRGLNKPKC 60 IQCGNVARSR CPFQCCKSCC YKAQNPCHIH VLKQNNTLPE KTPPTPAPSA DQPSTNSPLN 120 GSSSRLSSLQ KLPHHFLNSL RTRKSLAKKD VASINKWRFM KLEEHIQGDI DVENEAYDRY 180 TQNIGLLEET FYLTEDAAGE HETEATSSEE RMEIMVSEAK VRLKSDCSNA DGFKERIATI 240 LDQKLKELQG RGYEDDKPSD QNLDDHRKPV KLSIKQQMER NMKTNELLGK LTKAQSEDDL 300 RPCLGIMAQL FGKENSSSMV TSNKSSSQES TPAITPSYSF PKRMTRLEFD ENMSSKINDE 360 FSSLSQVARL *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MAASSPASSG KAASDTSTPA PAPTPAPAVA NGNGTPQKPP PGTGFDMPKP NLRGLNKPKC  60
IQCGNVARSR CPFQCCKSCC YKAQNPCHIH VLKQNNTLPE KTPPTPAPSA DQPSTNSPLN  120
GSSSRLSSLQ KLPHHFLNSL RTRKSLAKKD VASINKWRFM KLEEHIQGDI DVENEAYDRY  180
TQNIGLLEET FYLTEDAAGE HETEATSSEE RMEIMVSEAK VRLKSDCSNA DGFKERIATI  240
LDQKLKELQG RGYEDDKPSD QNLDDHRKPV KLSIKQQMER NMKTNELLGK LTKAQSEDDL  300
RPCLGIMAQL FGKENSSSMV TSNKSSSQES TPAITPSYSF PKRMTRLEFD ENMSSKINDE  360
FSSLSQVARL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast03G042700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003573337.1	0.0	uncharacterized protein LOC100823491
TrEMBL	I1I0N8	0.0	I1I0N8_BRADI; Uncharacterized protein
STRING	BRADI3G14240.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7375	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	2e-63

Link Out ? help Back to Top
Phytozome	Brast03G042700.1.p