PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G039800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 823aa    MW: 87277.6 Da    PI: 6.3139
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G039800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-19141196156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++eLe++F+++++p+ ++r+eL++ l+L+  qVk+WFqN+R++ k
  Brast03G039800.1.p 141 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRMLSLEPLQVKFWFQNKRTQIK 196
                         688999**********************************************9987 PP
2START168.25.7e-533145551206
                         HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
               START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqW 72 
                         ela +a++elv++a ++ep+Wv s+     + + ++e+ + f+++++               ++ea+r++gvv+m++a+lv++l+d+  qW
  Brast03G039800.1.p 314 ELAVAAMEELVRMARLGEPLWVPSPlsgggDTLVEEEYSRAFPRKHSssssssspaaaenhPRSEASRETGVVIMDQATLVSILMDVH-QW 403
                         57899*************************************99999*************99**************************.** PP

                         -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEE.EEEEEEEE..TTS-EEEEEEEEE-TTS--.....-TTSEE-E CS
               START  73 detla....kaetlevissg......galqlmvaelqalsplvp.Rdf.vfvRyirq.lgagdwvivdvSvdseqkppe....sssvvRae 146
                         +  +     +a+tl+v+s+g      galqlm+aelq++splvp R+   f+Ry++     g w++vdvS+d+ ++ +     s +   ++
  Brast03G039800.1.p 404 SSVFSsivsRAATLDVLSTGvagnldGALQLMSAELQVPSPLVPtRELpAFLRYCKHhPHTGAWAVVDVSLDNSSSASVvsssSGGNTNVR 494
                         ***********************************************868*******76789*************9998863222346899 PP

                         ESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 147 llpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                         ++ Sg++i++++ng+skv+w+ehv+l +++  h+l+ +lv+sg+a+ga++wv+tl+rqce+
  Brast03G039800.1.p 495 RRASGCVIQEMPNGYSKVVWIEHVELPAASMvHELYGPLVGSGTAFGARRWVSTLKRQCER 555
                         *************************9766555***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-21119196IPR009057Homeodomain-like
SuperFamilySSF466898.77E-19134198IPR009057Homeodomain-like
PROSITE profilePS5007116.908138198IPR001356Homeobox domain
SMARTSM003893.2E-18139202IPR001356Homeobox domain
CDDcd000862.14E-18141199No hitNo description
PfamPF000463.7E-17141196IPR001356Homeobox domain
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
PROSITE profilePS5084838.815305558IPR002913START domain
SuperFamilySSF559611.99E-27307557No hitNo description
CDDcd088756.97E-98309554No hitNo description
SMARTSM002346.8E-41314555IPR002913START domain
PfamPF018523.5E-43315555IPR002913START domain
SuperFamilySSF559612.44E-21576810No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MPGGMMVPGG GGRNVIGGGG GVGGYASSSS SALSLGQNMM DGGTMLHHQN HQLPAILQHH  60
LVDHHHLLPQ HQQAATSESD ARGPHGGVGG RNSNIDELEM SKSGGSNNLD GSGGGGEEED  120
QQEEEEEEEE PAAAGKRPRK KKRYHRHTQH QIQELEAFFK ECPHPDDKQR KELSRMLSLE  180
PLQVKFWFQN KRTQIKTQHE RQENTALRTE NEKLRAENMR YKEALATASC PSCGGPAAIG  240
EMSFDEHHLR IENARLRDEI DRISAIAAKY VGGAGAIKPS PAYPPPESSH LTGSIMLSGG  300
GHGGGEFDKP MVIELAVAAM EELVRMARLG EPLWVPSPLS GGGDTLVEEE YSRAFPRKHS  360
SSSSSSSPAA AENHPRSEAS RETGVVIMDQ ATLVSILMDV HQWSSVFSSI VSRAATLDVL  420
STGVAGNLDG ALQLMSAELQ VPSPLVPTRE LPAFLRYCKH HPHTGAWAVV DVSLDNSSSA  480
SVVSSSSGGN TNVRRRASGC VIQEMPNGYS KVVWIEHVEL PAASMVHELY GPLVGSGTAF  540
GARRWVSTLK RQCERLASAA MSAHPSSSDS VITSAEGRRS MLRLAERMTA SFCGGVAASA  600
THQWTTLSGS GEADVRVMTR KSVDDPGRPP GIILNAATSF WLPVSPAAVF AFLRDDSTRS  660
EWDILSNGGV VHEMAHIANG QNHGNAVSLL RVNNANANQS NMLILQESST DEEGGWSYVV  720
YAPVDVVAMN VVLNGGDPDY VALLPSGFAI LPDGPPAPQP GSGNNGGGGG GSLLTVAFQI  780
LVDSVPTAKL SLGSVATVNS LIACTVDRIK AAVVVSASDH HR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11018GGRNVIGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G039800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185630.0AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234287.20.0homeobox-leucine zipper protein ROC7
RefseqXP_014757112.10.0homeobox-leucine zipper protein ROC7
RefseqXP_014757114.10.0homeobox-leucine zipper protein ROC7
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLA0A0Q3HNM90.0A0A0Q3HNM9_BRADI; Uncharacterized protein
STRINGBRADI3G14500.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2