PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G029300.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 418aa    MW: 45837.9 Da    PI: 8.9512
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G029300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.41.9e-10103134334
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                         +++++rr+++NReAAr+sR+RKka+i++Le+ 
  Brast03G029300.2.p 103 KIRKTRRLAQNREAARKSRLRKKAYIQNLETS 134
                         5799*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0036101159IPR004827Basic-leucine zipper domain
PfamPF001704.6E-8103138IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.002103145IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.62E-7104145No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-7105146No hitNo description
PROSITE patternPS000360108123IPR004827Basic-leucine zipper domain
PfamPF141449.5E-27195270IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MPSVAESSSS SSMGTVYDRR HQHHPLHGAG VWAGHMPSPL SGPPGVLHAV RAMELAGPKF  60
EPPSHSQPLE QQQEEEEEDH AVALALPLSP DSSDQDPARP RDKIRKTRRL AQNREAARKS  120
RLRKKAYIQN LETSRMKLAR MEQELTMARQ QHVLCFGRAG TGSPAGLPLR ASFNPGVAAF  180
EVEYARWVEE QGRQTAALRA ALQAATPEPG RLRLLAEAAL AHYDRLFEAK SAAARRDVFF  240
VMSGAWRSPA ERFFLWISGF RPSDLLAVLA PQLEAPPPAL ALTEAQAEEV RRLRRTSRQA  300
EDALSHGLDT LKQSLAESLL LLAPAMAATA EEEAVGFDYA GHGGGNGDGE MGGAMGRLDE  360
LAGFVEQADH LRQQTLRNMY RILTPRQAAR GLLALGEYFG RLRALSELWV KRPREPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G029300.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7308998e-69EU730899.1 Brachypodium distachyon clone BAC DH002G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317983.10.0transcription factor HBP-1b(c38) isoform X2
TrEMBLA0A0Q3HP320.0A0A0Q3HP32_BRADI; Uncharacterized protein
STRINGBRADI3G15590.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.62e-74bZIP family protein