PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G029100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 340aa    MW: 36806 Da    PI: 4.6014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G029100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.51.6e-1378133156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr.krfslgkfgtaeeAakaaiaarkklege 56 
                         ++++GVr ++++g++ A+I +   +g  +     +lg+f+taeeAa+a++aa+ +l+g+
  Brast03G029100.1.p  78 TKFRGVR-RSRSGKYGAQISCR--RGmaMAwGMAWLGTFDTAEEAARAYDAAAIRLRGA 133
                         69****9.5669******9994..5776558999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-878132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-1979141IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1479141IPR016177DNA-binding domain
PROSITE profilePS5103218.20279140IPR001471AP2/ERF domain
SMARTSM003809.7E-2079146IPR001471AP2/ERF domain
PRINTSPR003676.2E-68091IPR001471AP2/ERF domain
PRINTSPR003676.2E-6106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAAACQPRET REIAAETTGP EIPSANSGPP RAGSIQHQQR GASSSGVMAA EHEEEEAALV  60
RAGRKRKRNA AGRSDGWTKF RGVRRSRSGK YGAQISCRRG MAMAWGMAWL GTFDTAEEAA  120
RAYDAAAIRL RGAKAVTNFE QRPVAAVADA DEYTREMPGE DPGDEGKVCS QQLMQAPVTG  180
QVGSKVMEAS MEFHGDHGRQ RIPVRPDCFG AAKEAVKLDD GVAAEAEFKQ PVDTADAQQL  240
HVLPDNAPLP SVSYDYSSDD PLLALLNDFL GQPAFLNDFL GQPAFLNDFL GQPAFLNNFL  300
EQPALINNFL ERPAFINNFP EQPASDLLSE DFLNDMDFT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast03G029100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317984.14e-98ethylene-responsive transcription factor RAP2-3
TrEMBLA0A2K2CXC01e-124A0A2K2CXC0_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5014622